Homologous gene family:
HOM04D000072
- Sequences
- Sub-families
-
ORTHO04D000289
(579 genes in 53 species)
ORTHO04D000630
(343 genes in 53 species)
ORTHO04D001289
(215 genes in 50 species)
View all sub-families (29)
Keywords
Overview of gene family content
The gene family HOM04D000072 has 2053 gene(s) in 53 species (196 outlier gene(s)).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
The order of species in the graph is based on the phylogenetic species tree.
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
The order of species in the graph is based on the phylogenetic species tree.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
Create
View
- ...the multiple sequence alignment of this gene family with BioJS
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
Gene list
Index of genes with 1 constraints:
- gene family : HOM04D000072
Page 1 of 103, showing 20 records out of 2053 total, starting on record 1, ending on 20
| gene_id | species | strand | chr | outlier |
|---|---|---|---|---|
| Vradi0361s00100 | vra | - | scaffold_361 | Yes |
| CAN.G476.11 | can | - | PGAv.1.6.scaffold476 | No |
| AL6G11330 | aly | + | scaffold_6 | No |
| Cucsa.072580 | csa | - | scaffold00765 | No |
| Eucgr.L01388 | egr | - | scaffold_193 | No |
| Manes.05G000900 | mes | + | Chromosome05 | No |
| Pbr004913.1.g | pbr | + | scaffold124.0 | No |
| Gorai.007G261300 | gra | - | Chr07 | No |
| HBR0375G028 | hbr | - | NW_018746319.1 | No |
| MDO.mRNA.g.6047.11 | mdo | + | Backbone_6047 | No |
| C.cajan_05956.g | ccaj | - | CcLG02 | No |
| TCA.TCM_020810 | tca | + | NC_023622.1 | No |
| PAB00061910 | pab | + | MA_920549 | No |
| MDO.mRNA.g.48.8 | mdo | - | Backbone_48 | No |
| UGI.Scf00963.19788 | ugi | + | Scf00963 | No |
| Brara.H00506 | bra | + | A08 | No |
| Peaxi162Scf00139g01221 | pax | + | Peaxi162Scf00139 | No |
| AT5G64740 | ath | + | Chr5 | No |
| Zm00001d031637 | zma | - | 1 | Yes |
| UGI.Scf00006.996 | ugi | + | Scf00006 | No |
Expansion plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench