Homologous gene family:
HOM04D000056
- Sequences
- Sub-families
-
ORTHO04D000078
(1103 genes in 51 species)
ORTHO04D000625
(347 genes in 41 species)
ORTHO04D001340
(210 genes in 51 species)
View all sub-families (21)
Keywords
Overview of gene family content
The gene family HOM04D000056 has 2257 gene(s) in 53 species (152 outlier gene(s)).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
The order of species in the graph is based on the phylogenetic species tree.
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
The order of species in the graph is based on the phylogenetic species tree.
Toolbox
Explore
- ...the local gene organization for homologous genes.
- ...the phylogenetic trees of this gene family.
- ...the expansion/depletion of species in this gene family.
Create
View
- ...the multiple sequence alignment of this gene family with BioJS
- ...the similarity heatmap of this gene family.
- ...the genome wide organization of this gene family.
Gene list
Index of genes with 1 constraints:
- gene family : HOM04D000056
Page 1 of 113, showing 20 records out of 2257 total, starting on record 1, ending on 20
| gene_id | species | strand | chr | outlier |
|---|---|---|---|---|
| DCAR_009752 | dca | - | DCARv2_Chr3 | No |
| Medtr8g071070 | mtr | + | chr8 | No |
| Solyc12g009930.1 | sly | + | SL2.50ch12 | No |
| Eucgr.E02951 | egr | - | Chr09 | No |
| PAB00036901 | pab | - | MA_3169780 | No |
| Cc04_g12900 | ccan | - | chr4 | No |
| Gorai.008G023900 | gra | - | Chr08 | No |
| C.cajan_03492.g | ccaj | - | CcLG11 | No |
| TCA.TCM_040533 | tca | - | NC_023617.1 | No |
| Manes.07G076300 | mes | + | Chromosome07 | No |
| Brara.D00540 | bra | + | A04 | No |
| Medtr4g117950 | mtr | - | chr4 | No |
| Bv6_127250_chnu | bvu | + | Bvchr6.sca001 | No |
| Peaxi162Scf01023g00111 | pax | + | Peaxi162Scf01023 | No |
| Achn158431 | ach | - | Chr2 | No |
| PAB00037218 | pab | - | MA_32509 | Yes |
| Peaxi162Scf00002g00284 | pax | + | Peaxi162Scf00002 | No |
| LOC_Os05g42020 | osa | + | Chr5 | No |
| Medtr2g035050 | mtr | - | chr2 | No |
| Cla018346.g | cla | - | Chr4 | No |
Expansion plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench