Expansion plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- ORTHO04D000001
- Gene count gene family
- 8914
- Total coding gene count
- 1,833,029
- Keywords
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Capsicum annuum | 35,884 | 180 | 1.96% | 2.02% | 1.03 |
| Solanum tuberosum | 39,028 | 168 | 2.13% | 1.88% | 0.88 |
| Solanum lycopersicum | 34,725 | 163 | 1.89% | 1.83% | 0.97 |
| Petunia axillaris | 32,928 | 173 | 1.8% | 1.94% | 1.08 |
| Erythranthe guttata | 28,140 | 180 | 1.54% | 2.02% | 1.31 |
| Utricularia gibba | 25,930 | 120 | 1.41% | 1.35% | 0.96 |
| Coffea canephora | 25,574 | 172 | 1.4% | 1.93% | 1.38 |
| Daucus carota | 32,113 | 147 | 1.75% | 1.65% | 0.94 |
| Actinidia chinensis | 39,040 | 191 | 2.13% | 2.14% | 1 |
| Amaranthus hypochondriacus | 23,847 | 113 | 1.3% | 1.27% | 0.98 |
| Chenopodium quinoa | 44,776 | 244 | 2.44% | 2.74% | 1.12 |
| Beta vulgaris | 26,920 | 138 | 1.47% | 1.55% | 1.05 |
| Arabidopsis lyrata | 31,073 | 148 | 1.7% | 1.66% | 0.98 |
| Arabidopsis thaliana | 27,655 | 150 | 1.51% | 1.68% | 1.11 |
| Capsella rubella | 26,521 | 141 | 1.45% | 1.58% | 1.09 |
| Brassica rapa | 40,492 | 152 | 2.21% | 1.71% | 0.77 |
| Brassica oleracea | 59,220 | 151 | 3.23% | 1.69% | 0.52 |
| Schrenkiella parvula | 26,313 | 148 | 1.44% | 1.66% | 1.15 |
| Tarenaya hassleriana | 27,396 | 158 | 1.49% | 1.77% | 1.19 |
| Carica papaya | 27,768 | 166 | 1.51% | 1.86% | 1.23 |
| Corchorus olitorius | 35,704 | 157 | 1.95% | 1.76% | 0.9 |
| Theobroma cacao | 29,232 | 184 | 1.59% | 2.06% | 1.3 |
| Gossypium raimondii | 37,505 | 184 | 2.05% | 2.06% | 1 |
| Citrus clementina | 24,533 | 167 | 1.34% | 1.87% | 1.4 |
| Eucalyptus grandis | 36,349 | 228 | 1.98% | 2.56% | 1.29 |
| Malus domestica | 53,922 | 153 | 2.94% | 1.72% | 0.59 |
| Pyrus bretschneideri | 42,812 | 209 | 2.34% | 2.34% | 1 |
| Prunus persica | 26,873 | 204 | 1.47% | 2.29% | 1.56 |
| Fragaria vesca | 32,831 | 141 | 1.79% | 1.58% | 0.88 |
| Ziziphus jujuba | 29,293 | 251 | 1.6% | 2.82% | 1.76 |
| Cucumis melo | 27,427 | 88 | 1.5% | 0.99% | 0.66 |
| Cucumis sativus L. | 21,503 | 142 | 1.17% | 1.59% | 1.36 |
| Citrullus lanatus | 23,440 | 165 | 1.28% | 1.85% | 1.45 |
| Medicago truncatula | 50,894 | 187 | 2.78% | 2.1% | 0.76 |
| Trifolium pratense | 39,948 | 179 | 2.18% | 2.01% | 0.92 |
| Cicer arietinum | 23,550 | 131 | 1.28% | 1.47% | 1.15 |
| Cajanus cajan | 48,680 | 185 | 2.66% | 2.08% | 0.78 |
| Glycine max | 56,044 | 291 | 3.06% | 3.26% | 1.07 |
| Vigna radiata var. radiata | 22,368 | 138 | 1.22% | 1.55% | 1.27 |
| Arachis ipaensis | 41,840 | 140 | 2.28% | 1.57% | 0.69 |
| Hevea brasiliensis | 35,196 | 177 | 1.92% | 1.99% | 1.04 |
| Manihot esculenta | 33,033 | 179 | 1.8% | 2.01% | 1.12 |
| Ricinus communis | 31,221 | 153 | 1.7% | 1.72% | 1.01 |
| Populus trichocarpa | 42,950 | 191 | 2.34% | 2.14% | 0.91 |
| Vitis vinifera | 26,346 | 194 | 1.44% | 2.18% | 1.51 |
| Nelumbo nucifera | 26,685 | 215 | 1.46% | 2.41% | 1.65 |
| Oryza sativa ssp. japonica | 42,189 | 163 | 2.3% | 1.83% | 0.8 |
| Zea mays | 39,498 | 150 | 2.15% | 1.68% | 0.78 |
| Amborella trichopoda | 26,846 | 126 | 1.46% | 1.41% | 0.97 |
| Picea abies | 66,632 | 522 | 3.64% | 5.86% | 1.61 |
| Selaginella moellendorffii | 22,285 | 103 | 1.22% | 1.16% | 0.95 |
| Marchantia polymorpha | 19,287 | 0 | 1.05% | 0% | 0 |
| Physcomitrium patens | 32,926 | 14 | 1.8% | 0.16% | 0.09 |
| Chlamydomonas reinhardtii | 17,741 | 0 | 0.97% | 0% | 0 |
| Micromonas commoda | 10,103 | 0 | 0.55% | 0% | 0 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Solanum | 2 | 73,753 | 331 | 4.02% | 3.71% | 0.92 |
| Solanoideae | 3 | 109,637 | 511 | 5.98% | 5.73% | 0.96 |
| Solanaceae | 4 | 142,565 | 684 | 7.78% | 7.67% | 0.99 |
| Lamiales | 2 | 54,070 | 300 | 2.95% | 3.37% | 1.14 |
| Lamiids | 7 | 222,209 | 1,156 | 12.12% | 12.97% | 1.07 |
| Asterids | 9 | 293,362 | 1,494 | 16% | 16.76% | 1.05 |
| Chenopodiaceae | 2 | 71,696 | 382 | 3.91% | 4.29% | 1.1 |
| Caryophyllales | 3 | 95,543 | 495 | 5.21% | 5.55% | 1.07 |
| Arabidopsis | 2 | 58,728 | 298 | 3.2% | 3.34% | 1.04 |
| Camelineae | 3 | 85,249 | 439 | 4.65% | 4.92% | 1.06 |
| Brassica | 2 | 99,712 | 303 | 5.44% | 3.4% | 0.63 |
| Brassicaceae | 6 | 211,274 | 890 | 11.53% | 9.98% | 0.87 |
| Brassicales | 8 | 266,438 | 1,214 | 14.54% | 13.62% | 0.94 |
| Malvaceae | 3 | 102,441 | 525 | 5.59% | 5.89% | 1.05 |
| Malvids | 13 | 429,761 | 2,134 | 23.45% | 23.94% | 1.02 |
| Maleae | 2 | 96,734 | 362 | 5.28% | 4.06% | 0.77 |
| Maloideae | 3 | 123,607 | 566 | 6.74% | 6.35% | 0.94 |
| Rosaceae | 4 | 156,438 | 707 | 8.53% | 7.93% | 0.93 |
| Rosales | 5 | 185,731 | 958 | 10.13% | 10.75% | 1.06 |
| Cucumis | 2 | 48,930 | 230 | 2.67% | 2.58% | 0.97 |
| Benincaseae | 3 | 72,370 | 395 | 3.95% | 4.43% | 1.12 |
| Trifolieae | 2 | 90,842 | 366 | 4.96% | 4.11% | 0.83 |
| Phaseoleae | 3 | 127,092 | 614 | 6.93% | 6.89% | 0.99 |
| Papilionoideae | 7 | 283,324 | 1,251 | 15.46% | 14.03% | 0.91 |
| Crotonoideae | 2 | 68,229 | 356 | 3.72% | 3.99% | 1.07 |
| Euphorbiaceae | 3 | 99,450 | 509 | 5.43% | 5.71% | 1.05 |
| Malpighiales | 4 | 142,400 | 700 | 7.77% | 7.85% | 1.01 |
| Fabids | 19 | 683,825 | 3,304 | 37.31% | 37.07% | 0.99 |
| Rosids | 33 | 1,139,932 | 5,632 | 62.19% | 63.18% | 1.02 |
| Pentapetalae | 45 | 1,528,837 | 7,621 | 83.4% | 85.49% | 1.03 |
| Eudicotyledons | 46 | 1,555,522 | 7,836 | 84.86% | 87.91% | 1.04 |
| Poaceae | 2 | 81,687 | 313 | 4.46% | 3.51% | 0.79 |
| Mesangiospermae | 48 | 1,637,209 | 8,149 | 89.32% | 91.42% | 1.02 |
| Magnoliophyta | 49 | 1,664,055 | 8,275 | 90.78% | 92.83% | 1.02 |
| Spermatophyta | 50 | 1,730,687 | 8,797 | 94.42% | 98.69% | 1.05 |
| Tracheophyta | 51 | 1,752,972 | 8,900 | 95.63% | 99.84% | 1.04 |
| Embryophyta | 53 | 1,805,185 | 8,914 | 98.48% | 100% | 1.02 |
| Chlorophyta | 2 | 27,844 | 0 | 1.52% | 0% | 0 |
| Viridiplantae | 55 | 1,833,029 | 8,914 | 100% | 100% | 1 |