Expansion plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM04D000343
- Gene count gene family
- 666
- Total coding gene count
- 1,833,029
- Keywords
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Capsicum annuum | 35,884 | 8 | 1.96% | 1.2% | 0.61 |
| Solanum tuberosum | 39,028 | 11 | 2.13% | 1.65% | 0.77 |
| Solanum lycopersicum | 34,725 | 12 | 1.89% | 1.8% | 0.95 |
| Petunia axillaris | 32,928 | 13 | 1.8% | 1.95% | 1.08 |
| Erythranthe guttata | 28,140 | 9 | 1.54% | 1.35% | 0.88 |
| Utricularia gibba | 25,930 | 5 | 1.41% | 0.75% | 0.53 |
| Coffea canephora | 25,574 | 10 | 1.4% | 1.5% | 1.07 |
| Daucus carota | 32,113 | 11 | 1.75% | 1.65% | 0.94 |
| Actinidia chinensis | 39,040 | 15 | 2.13% | 2.25% | 1.06 |
| Amaranthus hypochondriacus | 23,847 | 7 | 1.3% | 1.05% | 0.81 |
| Chenopodium quinoa | 44,776 | 7 | 2.44% | 1.05% | 0.43 |
| Beta vulgaris | 26,920 | 4 | 1.47% | 0.6% | 0.41 |
| Arabidopsis lyrata | 31,073 | 14 | 1.7% | 2.1% | 1.24 |
| Arabidopsis thaliana | 27,655 | 15 | 1.51% | 2.25% | 1.49 |
| Capsella rubella | 26,521 | 12 | 1.45% | 1.8% | 1.24 |
| Brassica rapa | 40,492 | 27 | 2.21% | 4.05% | 1.83 |
| Brassica oleracea | 59,220 | 26 | 3.23% | 3.9% | 1.21 |
| Schrenkiella parvula | 26,313 | 14 | 1.44% | 2.1% | 1.46 |
| Tarenaya hassleriana | 27,396 | 21 | 1.49% | 3.15% | 2.11 |
| Carica papaya | 27,768 | 8 | 1.51% | 1.2% | 0.79 |
| Corchorus olitorius | 35,704 | 7 | 1.95% | 1.05% | 0.54 |
| Theobroma cacao | 29,232 | 8 | 1.59% | 1.2% | 0.75 |
| Gossypium raimondii | 37,505 | 21 | 2.05% | 3.15% | 1.54 |
| Citrus clementina | 24,533 | 9 | 1.34% | 1.35% | 1.01 |
| Eucalyptus grandis | 36,349 | 14 | 1.98% | 2.1% | 1.06 |
| Malus domestica | 53,922 | 15 | 2.94% | 2.25% | 0.77 |
| Pyrus bretschneideri | 42,812 | 18 | 2.34% | 2.7% | 1.15 |
| Prunus persica | 26,873 | 9 | 1.47% | 1.35% | 0.92 |
| Fragaria vesca | 32,831 | 8 | 1.79% | 1.2% | 0.67 |
| Ziziphus jujuba | 29,293 | 20 | 1.6% | 3% | 1.88 |
| Cucumis melo | 27,427 | 14 | 1.5% | 2.1% | 1.4 |
| Cucumis sativus L. | 21,503 | 11 | 1.17% | 1.65% | 1.41 |
| Citrullus lanatus | 23,440 | 12 | 1.28% | 1.8% | 1.41 |
| Medicago truncatula | 50,894 | 14 | 2.78% | 2.1% | 0.76 |
| Trifolium pratense | 39,948 | 11 | 2.18% | 1.65% | 0.76 |
| Cicer arietinum | 23,550 | 8 | 1.28% | 1.2% | 0.94 |
| Cajanus cajan | 48,680 | 15 | 2.66% | 2.25% | 0.85 |
| Glycine max | 56,044 | 31 | 3.06% | 4.65% | 1.52 |
| Vigna radiata var. radiata | 22,368 | 11 | 1.22% | 1.65% | 1.35 |
| Arachis ipaensis | 41,840 | 11 | 2.28% | 1.65% | 0.72 |
| Hevea brasiliensis | 35,196 | 18 | 1.92% | 2.7% | 1.41 |
| Manihot esculenta | 33,033 | 16 | 1.8% | 2.4% | 1.33 |
| Ricinus communis | 31,221 | 10 | 1.7% | 1.5% | 0.88 |
| Populus trichocarpa | 42,950 | 19 | 2.34% | 2.85% | 1.22 |
| Vitis vinifera | 26,346 | 9 | 1.44% | 1.35% | 0.94 |
| Nelumbo nucifera | 26,685 | 13 | 1.46% | 1.95% | 1.34 |
| Oryza sativa ssp. japonica | 42,189 | 12 | 2.3% | 1.8% | 0.78 |
| Zea mays | 39,498 | 16 | 2.15% | 2.4% | 1.12 |
| Amborella trichopoda | 26,846 | 6 | 1.46% | 0.9% | 0.62 |
| Picea abies | 66,632 | 26 | 3.64% | 3.9% | 1.07 |
| Selaginella moellendorffii | 22,285 | 2 | 1.22% | 0.3% | 0.25 |
| Marchantia polymorpha | 19,287 | 1 | 1.05% | 0.15% | 0.14 |
| Physcomitrium patens | 32,926 | 2 | 1.8% | 0.3% | 0.17 |
| Chlamydomonas reinhardtii | 17,741 | 0 | 0.97% | 0% | 0 |
| Micromonas commoda | 10,103 | 0 | 0.55% | 0% | 0 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Solanum | 2 | 73,753 | 23 | 4.02% | 3.45% | 0.86 |
| Solanoideae | 3 | 109,637 | 31 | 5.98% | 4.65% | 0.78 |
| Solanaceae | 4 | 142,565 | 44 | 7.78% | 6.61% | 0.85 |
| Lamiales | 2 | 54,070 | 14 | 2.95% | 2.1% | 0.71 |
| Lamiids | 7 | 222,209 | 68 | 12.12% | 10.21% | 0.84 |
| Asterids | 9 | 293,362 | 94 | 16% | 14.11% | 0.88 |
| Chenopodiaceae | 2 | 71,696 | 11 | 3.91% | 1.65% | 0.42 |
| Caryophyllales | 3 | 95,543 | 18 | 5.21% | 2.7% | 0.52 |
| Arabidopsis | 2 | 58,728 | 29 | 3.2% | 4.35% | 1.36 |
| Camelineae | 3 | 85,249 | 41 | 4.65% | 6.16% | 1.32 |
| Brassica | 2 | 99,712 | 53 | 5.44% | 7.96% | 1.46 |
| Brassicaceae | 6 | 211,274 | 108 | 11.53% | 16.22% | 1.41 |
| Brassicales | 8 | 266,438 | 137 | 14.54% | 20.57% | 1.41 |
| Malvaceae | 3 | 102,441 | 36 | 5.59% | 5.41% | 0.97 |
| Malvids | 13 | 429,761 | 196 | 23.45% | 29.43% | 1.26 |
| Maleae | 2 | 96,734 | 33 | 5.28% | 4.95% | 0.94 |
| Maloideae | 3 | 123,607 | 42 | 6.74% | 6.31% | 0.94 |
| Rosaceae | 4 | 156,438 | 50 | 8.53% | 7.51% | 0.88 |
| Rosales | 5 | 185,731 | 70 | 10.13% | 10.51% | 1.04 |
| Cucumis | 2 | 48,930 | 25 | 2.67% | 3.75% | 1.4 |
| Benincaseae | 3 | 72,370 | 37 | 3.95% | 5.56% | 1.41 |
| Trifolieae | 2 | 90,842 | 25 | 4.96% | 3.75% | 0.76 |
| Phaseoleae | 3 | 127,092 | 57 | 6.93% | 8.56% | 1.24 |
| Papilionoideae | 7 | 283,324 | 101 | 15.46% | 15.17% | 0.98 |
| Crotonoideae | 2 | 68,229 | 34 | 3.72% | 5.11% | 1.37 |
| Euphorbiaceae | 3 | 99,450 | 44 | 5.43% | 6.61% | 1.22 |
| Malpighiales | 4 | 142,400 | 63 | 7.77% | 9.46% | 1.22 |
| Fabids | 19 | 683,825 | 271 | 37.31% | 40.69% | 1.09 |
| Rosids | 33 | 1,139,932 | 476 | 62.19% | 71.47% | 1.15 |
| Pentapetalae | 45 | 1,528,837 | 588 | 83.4% | 88.29% | 1.06 |
| Eudicotyledons | 46 | 1,555,522 | 601 | 84.86% | 90.24% | 1.06 |
| Poaceae | 2 | 81,687 | 28 | 4.46% | 4.2% | 0.94 |
| Mesangiospermae | 48 | 1,637,209 | 629 | 89.32% | 94.44% | 1.06 |
| Magnoliophyta | 49 | 1,664,055 | 635 | 90.78% | 95.35% | 1.05 |
| Spermatophyta | 50 | 1,730,687 | 661 | 94.42% | 99.25% | 1.05 |
| Tracheophyta | 51 | 1,752,972 | 663 | 95.63% | 99.55% | 1.04 |
| Embryophyta | 53 | 1,805,185 | 666 | 98.48% | 100% | 1.02 |
| Chlorophyta | 2 | 27,844 | 0 | 1.52% | 0% | 0 |
| Viridiplantae | 55 | 1,833,029 | 666 | 100% | 100% | 1 |