Expansion plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM04D000293
- Gene count gene family
- 748
- Total coding gene count
- 1,833,029
- Keywords
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Capsicum annuum | 35,884 | 15 | 1.96% | 2.01% | 1.03 |
| Solanum tuberosum | 39,028 | 15 | 2.13% | 2.01% | 0.94 |
| Solanum lycopersicum | 34,725 | 15 | 1.89% | 2.01% | 1.06 |
| Petunia axillaris | 32,928 | 14 | 1.8% | 1.87% | 1.04 |
| Erythranthe guttata | 28,140 | 13 | 1.54% | 1.74% | 1.13 |
| Utricularia gibba | 25,930 | 11 | 1.41% | 1.47% | 1.04 |
| Coffea canephora | 25,574 | 11 | 1.4% | 1.47% | 1.05 |
| Daucus carota | 32,113 | 13 | 1.75% | 1.74% | 0.99 |
| Actinidia chinensis | 39,040 | 18 | 2.13% | 2.41% | 1.13 |
| Amaranthus hypochondriacus | 23,847 | 13 | 1.3% | 1.74% | 1.34 |
| Chenopodium quinoa | 44,776 | 16 | 2.44% | 2.14% | 0.88 |
| Beta vulgaris | 26,920 | 9 | 1.47% | 1.2% | 0.82 |
| Arabidopsis lyrata | 31,073 | 17 | 1.7% | 2.27% | 1.34 |
| Arabidopsis thaliana | 27,655 | 16 | 1.51% | 2.14% | 1.42 |
| Capsella rubella | 26,521 | 17 | 1.45% | 2.27% | 1.57 |
| Brassica rapa | 40,492 | 28 | 2.21% | 3.74% | 1.69 |
| Brassica oleracea | 59,220 | 28 | 3.23% | 3.74% | 1.16 |
| Schrenkiella parvula | 26,313 | 16 | 1.44% | 2.14% | 1.49 |
| Tarenaya hassleriana | 27,396 | 19 | 1.49% | 2.54% | 1.7 |
| Carica papaya | 27,768 | 10 | 1.51% | 1.34% | 0.89 |
| Corchorus olitorius | 35,704 | 11 | 1.95% | 1.47% | 0.75 |
| Theobroma cacao | 29,232 | 12 | 1.59% | 1.6% | 1.01 |
| Gossypium raimondii | 37,505 | 20 | 2.05% | 2.67% | 1.3 |
| Citrus clementina | 24,533 | 11 | 1.34% | 1.47% | 1.1 |
| Eucalyptus grandis | 36,349 | 14 | 1.98% | 1.87% | 0.94 |
| Malus domestica | 53,922 | 20 | 2.94% | 2.67% | 0.91 |
| Pyrus bretschneideri | 42,812 | 22 | 2.34% | 2.94% | 1.26 |
| Prunus persica | 26,873 | 12 | 1.47% | 1.6% | 1.09 |
| Fragaria vesca | 32,831 | 10 | 1.79% | 1.34% | 0.75 |
| Ziziphus jujuba | 29,293 | 15 | 1.6% | 2.01% | 1.26 |
| Cucumis melo | 27,427 | 10 | 1.5% | 1.34% | 0.89 |
| Cucumis sativus L. | 21,503 | 11 | 1.17% | 1.47% | 1.26 |
| Citrullus lanatus | 23,440 | 9 | 1.28% | 1.2% | 0.94 |
| Medicago truncatula | 50,894 | 15 | 2.78% | 2.01% | 0.72 |
| Trifolium pratense | 39,948 | 17 | 2.18% | 2.27% | 1.04 |
| Cicer arietinum | 23,550 | 9 | 1.28% | 1.2% | 0.94 |
| Cajanus cajan | 48,680 | 12 | 2.66% | 1.6% | 0.6 |
| Glycine max | 56,044 | 28 | 3.06% | 3.74% | 1.22 |
| Vigna radiata var. radiata | 22,368 | 12 | 1.22% | 1.6% | 1.31 |
| Arachis ipaensis | 41,840 | 13 | 2.28% | 1.74% | 0.76 |
| Hevea brasiliensis | 35,196 | 16 | 1.92% | 2.14% | 1.11 |
| Manihot esculenta | 33,033 | 16 | 1.8% | 2.14% | 1.19 |
| Ricinus communis | 31,221 | 9 | 1.7% | 1.2% | 0.71 |
| Populus trichocarpa | 42,950 | 18 | 2.34% | 2.41% | 1.03 |
| Vitis vinifera | 26,346 | 13 | 1.44% | 1.74% | 1.21 |
| Nelumbo nucifera | 26,685 | 10 | 1.46% | 1.34% | 0.92 |
| Oryza sativa ssp. japonica | 42,189 | 15 | 2.3% | 2.01% | 0.87 |
| Zea mays | 39,498 | 22 | 2.15% | 2.94% | 1.37 |
| Amborella trichopoda | 26,846 | 9 | 1.46% | 1.2% | 0.82 |
| Picea abies | 66,632 | 10 | 3.64% | 1.34% | 0.37 |
| Selaginella moellendorffii | 22,285 | 4 | 1.22% | 0.53% | 0.43 |
| Marchantia polymorpha | 19,287 | 1 | 1.05% | 0.13% | 0.12 |
| Physcomitrium patens | 32,926 | 6 | 1.8% | 0.8% | 0.44 |
| Chlamydomonas reinhardtii | 17,741 | 2 | 0.97% | 0.27% | 0.28 |
| Micromonas commoda | 10,103 | 0 | 0.55% | 0% | 0 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Solanum | 2 | 73,753 | 30 | 4.02% | 4.01% | 1 |
| Solanoideae | 3 | 109,637 | 45 | 5.98% | 6.02% | 1.01 |
| Solanaceae | 4 | 142,565 | 59 | 7.78% | 7.89% | 1.01 |
| Lamiales | 2 | 54,070 | 24 | 2.95% | 3.21% | 1.09 |
| Lamiids | 7 | 222,209 | 94 | 12.12% | 12.57% | 1.04 |
| Asterids | 9 | 293,362 | 125 | 16% | 16.71% | 1.04 |
| Chenopodiaceae | 2 | 71,696 | 25 | 3.91% | 3.34% | 0.85 |
| Caryophyllales | 3 | 95,543 | 38 | 5.21% | 5.08% | 0.98 |
| Arabidopsis | 2 | 58,728 | 33 | 3.2% | 4.41% | 1.38 |
| Camelineae | 3 | 85,249 | 50 | 4.65% | 6.68% | 1.44 |
| Brassica | 2 | 99,712 | 56 | 5.44% | 7.49% | 1.38 |
| Brassicaceae | 6 | 211,274 | 122 | 11.53% | 16.31% | 1.41 |
| Brassicales | 8 | 266,438 | 151 | 14.54% | 20.19% | 1.39 |
| Malvaceae | 3 | 102,441 | 43 | 5.59% | 5.75% | 1.03 |
| Malvids | 13 | 429,761 | 219 | 23.45% | 29.28% | 1.25 |
| Maleae | 2 | 96,734 | 42 | 5.28% | 5.61% | 1.06 |
| Maloideae | 3 | 123,607 | 54 | 6.74% | 7.22% | 1.07 |
| Rosaceae | 4 | 156,438 | 64 | 8.53% | 8.56% | 1 |
| Rosales | 5 | 185,731 | 79 | 10.13% | 10.56% | 1.04 |
| Cucumis | 2 | 48,930 | 21 | 2.67% | 2.81% | 1.05 |
| Benincaseae | 3 | 72,370 | 30 | 3.95% | 4.01% | 1.02 |
| Trifolieae | 2 | 90,842 | 32 | 4.96% | 4.28% | 0.86 |
| Phaseoleae | 3 | 127,092 | 52 | 6.93% | 6.95% | 1 |
| Papilionoideae | 7 | 283,324 | 106 | 15.46% | 14.17% | 0.92 |
| Crotonoideae | 2 | 68,229 | 32 | 3.72% | 4.28% | 1.15 |
| Euphorbiaceae | 3 | 99,450 | 41 | 5.43% | 5.48% | 1.01 |
| Malpighiales | 4 | 142,400 | 59 | 7.77% | 7.89% | 1.02 |
| Fabids | 19 | 683,825 | 274 | 37.31% | 36.63% | 0.98 |
| Rosids | 33 | 1,139,932 | 506 | 62.19% | 67.65% | 1.09 |
| Pentapetalae | 45 | 1,528,837 | 669 | 83.4% | 89.44% | 1.07 |
| Eudicotyledons | 46 | 1,555,522 | 679 | 84.86% | 90.78% | 1.07 |
| Poaceae | 2 | 81,687 | 37 | 4.46% | 4.95% | 1.11 |
| Mesangiospermae | 48 | 1,637,209 | 716 | 89.32% | 95.72% | 1.07 |
| Magnoliophyta | 49 | 1,664,055 | 725 | 90.78% | 96.93% | 1.07 |
| Spermatophyta | 50 | 1,730,687 | 735 | 94.42% | 98.26% | 1.04 |
| Tracheophyta | 51 | 1,752,972 | 739 | 95.63% | 98.8% | 1.03 |
| Embryophyta | 53 | 1,805,185 | 746 | 98.48% | 99.73% | 1.01 |
| Chlorophyta | 2 | 27,844 | 2 | 1.52% | 0.27% | 0.18 |
| Viridiplantae | 55 | 1,833,029 | 748 | 100% | 100% | 1 |