Expansion plot
Gene family finder
Synteny plot
Ks-graphs
Skyline plot
WGDotplot
Functional clusters
WGMapping
BLAST
WorkbenchGene family expansion analysis 
Tool which reports the expansion/depletion of a species/lineage (through gene copy number variation compared to total proteome sizes of the species) within a gene family.
- Gene family
- HOM04D000001
- Gene count gene family
- 15702
- Total coding gene count
- 1,833,029
- Keywords
Organisms
| Organism | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|
| Capsicum annuum | 35,884 | 355 | 1.96% | 2.26% | 1.15 |
| Solanum tuberosum | 39,028 | 265 | 2.13% | 1.69% | 0.79 |
| Solanum lycopersicum | 34,725 | 275 | 1.89% | 1.75% | 0.93 |
| Petunia axillaris | 32,928 | 265 | 1.8% | 1.69% | 0.94 |
| Erythranthe guttata | 28,140 | 255 | 1.54% | 1.62% | 1.05 |
| Utricularia gibba | 25,930 | 180 | 1.41% | 1.15% | 0.82 |
| Coffea canephora | 25,574 | 256 | 1.4% | 1.63% | 1.16 |
| Daucus carota | 32,113 | 218 | 1.75% | 1.39% | 0.79 |
| Actinidia chinensis | 39,040 | 353 | 2.13% | 2.25% | 1.06 |
| Amaranthus hypochondriacus | 23,847 | 223 | 1.3% | 1.42% | 1.09 |
| Chenopodium quinoa | 44,776 | 370 | 2.44% | 2.36% | 0.97 |
| Beta vulgaris | 26,920 | 201 | 1.47% | 1.28% | 0.87 |
| Arabidopsis lyrata | 31,073 | 224 | 1.7% | 1.43% | 0.84 |
| Arabidopsis thaliana | 27,655 | 208 | 1.51% | 1.32% | 0.87 |
| Capsella rubella | 26,521 | 199 | 1.45% | 1.27% | 0.88 |
| Brassica rapa | 40,492 | 215 | 2.21% | 1.37% | 0.62 |
| Brassica oleracea | 59,220 | 240 | 3.23% | 1.53% | 0.47 |
| Schrenkiella parvula | 26,313 | 207 | 1.44% | 1.32% | 0.92 |
| Tarenaya hassleriana | 27,396 | 230 | 1.49% | 1.46% | 0.98 |
| Carica papaya | 27,768 | 311 | 1.51% | 1.98% | 1.31 |
| Corchorus olitorius | 35,704 | 238 | 1.95% | 1.52% | 0.78 |
| Theobroma cacao | 29,232 | 262 | 1.59% | 1.67% | 1.05 |
| Gossypium raimondii | 37,505 | 260 | 2.05% | 1.66% | 0.81 |
| Citrus clementina | 24,533 | 255 | 1.34% | 1.62% | 1.21 |
| Eucalyptus grandis | 36,349 | 335 | 1.98% | 2.13% | 1.08 |
| Malus domestica | 53,922 | 639 | 2.94% | 4.07% | 1.38 |
| Pyrus bretschneideri | 42,812 | 409 | 2.34% | 2.6% | 1.11 |
| Prunus persica | 26,873 | 297 | 1.47% | 1.89% | 1.29 |
| Fragaria vesca | 32,831 | 251 | 1.79% | 1.6% | 0.89 |
| Ziziphus jujuba | 29,293 | 371 | 1.6% | 2.36% | 1.48 |
| Cucumis melo | 27,427 | 110 | 1.5% | 0.7% | 0.47 |
| Cucumis sativus L. | 21,503 | 199 | 1.17% | 1.27% | 1.09 |
| Citrullus lanatus | 23,440 | 233 | 1.28% | 1.48% | 1.16 |
| Medicago truncatula | 50,894 | 319 | 2.78% | 2.03% | 0.73 |
| Trifolium pratense | 39,948 | 338 | 2.18% | 2.15% | 0.99 |
| Cicer arietinum | 23,550 | 336 | 1.28% | 2.14% | 1.67 |
| Cajanus cajan | 48,680 | 288 | 2.66% | 1.83% | 0.69 |
| Glycine max | 56,044 | 448 | 3.06% | 2.85% | 0.93 |
| Vigna radiata var. radiata | 22,368 | 227 | 1.22% | 1.45% | 1.19 |
| Arachis ipaensis | 41,840 | 277 | 2.28% | 1.76% | 0.77 |
| Hevea brasiliensis | 35,196 | 257 | 1.92% | 1.64% | 0.85 |
| Manihot esculenta | 33,033 | 259 | 1.8% | 1.65% | 0.92 |
| Ricinus communis | 31,221 | 262 | 1.7% | 1.67% | 0.98 |
| Populus trichocarpa | 42,950 | 311 | 2.34% | 1.98% | 0.85 |
| Vitis vinifera | 26,346 | 283 | 1.44% | 1.8% | 1.25 |
| Nelumbo nucifera | 26,685 | 381 | 1.46% | 2.43% | 1.66 |
| Oryza sativa ssp. japonica | 42,189 | 261 | 2.3% | 1.66% | 0.72 |
| Zea mays | 39,498 | 244 | 2.15% | 1.55% | 0.72 |
| Amborella trichopoda | 26,846 | 330 | 1.46% | 2.1% | 1.44 |
| Picea abies | 66,632 | 837 | 3.64% | 5.33% | 1.46 |
| Selaginella moellendorffii | 22,285 | 1,106 | 1.22% | 7.04% | 5.77 |
| Marchantia polymorpha | 19,287 | 2 | 1.05% | 0.01% | 0.01 |
| Physcomitrium patens | 32,926 | 18 | 1.8% | 0.11% | 0.06 |
| Chlamydomonas reinhardtii | 17,741 | 4 | 0.97% | 0.03% | 0.03 |
| Micromonas commoda | 10,103 | 5 | 0.55% | 0.03% | 0.05 |
Phylogenetic clades
| Clade | Num species | Total genes | Genes in family | Percentage total | Percentage family | Ratio family vs. total |
|---|---|---|---|---|---|---|
| Solanum | 2 | 73,753 | 540 | 4.02% | 3.44% | 0.86 |
| Solanoideae | 3 | 109,637 | 895 | 5.98% | 5.7% | 0.95 |
| Solanaceae | 4 | 142,565 | 1,160 | 7.78% | 7.39% | 0.95 |
| Lamiales | 2 | 54,070 | 435 | 2.95% | 2.77% | 0.94 |
| Lamiids | 7 | 222,209 | 1,851 | 12.12% | 11.79% | 0.97 |
| Asterids | 9 | 293,362 | 2,422 | 16% | 15.42% | 0.96 |
| Chenopodiaceae | 2 | 71,696 | 571 | 3.91% | 3.64% | 0.93 |
| Caryophyllales | 3 | 95,543 | 794 | 5.21% | 5.06% | 0.97 |
| Arabidopsis | 2 | 58,728 | 432 | 3.2% | 2.75% | 0.86 |
| Camelineae | 3 | 85,249 | 631 | 4.65% | 4.02% | 0.86 |
| Brassica | 2 | 99,712 | 455 | 5.44% | 2.9% | 0.53 |
| Brassicaceae | 6 | 211,274 | 1,293 | 11.53% | 8.23% | 0.71 |
| Brassicales | 8 | 266,438 | 1,834 | 14.54% | 11.68% | 0.8 |
| Malvaceae | 3 | 102,441 | 760 | 5.59% | 4.84% | 0.87 |
| Malvids | 13 | 429,761 | 3,184 | 23.45% | 20.28% | 0.86 |
| Maleae | 2 | 96,734 | 1,048 | 5.28% | 6.67% | 1.26 |
| Maloideae | 3 | 123,607 | 1,345 | 6.74% | 8.57% | 1.27 |
| Rosaceae | 4 | 156,438 | 1,596 | 8.53% | 10.16% | 1.19 |
| Rosales | 5 | 185,731 | 1,967 | 10.13% | 12.53% | 1.24 |
| Cucumis | 2 | 48,930 | 309 | 2.67% | 1.97% | 0.74 |
| Benincaseae | 3 | 72,370 | 542 | 3.95% | 3.45% | 0.87 |
| Trifolieae | 2 | 90,842 | 657 | 4.96% | 4.18% | 0.84 |
| Phaseoleae | 3 | 127,092 | 963 | 6.93% | 6.13% | 0.88 |
| Papilionoideae | 7 | 283,324 | 2,233 | 15.46% | 14.22% | 0.92 |
| Crotonoideae | 2 | 68,229 | 516 | 3.72% | 3.29% | 0.88 |
| Euphorbiaceae | 3 | 99,450 | 778 | 5.43% | 4.95% | 0.91 |
| Malpighiales | 4 | 142,400 | 1,089 | 7.77% | 6.94% | 0.89 |
| Fabids | 19 | 683,825 | 5,831 | 37.31% | 37.14% | 1 |
| Rosids | 33 | 1,139,932 | 9,298 | 62.19% | 59.22% | 0.95 |
| Pentapetalae | 45 | 1,528,837 | 12,514 | 83.4% | 79.7% | 0.96 |
| Eudicotyledons | 46 | 1,555,522 | 12,895 | 84.86% | 82.12% | 0.97 |
| Poaceae | 2 | 81,687 | 505 | 4.46% | 3.22% | 0.72 |
| Mesangiospermae | 48 | 1,637,209 | 13,400 | 89.32% | 85.34% | 0.96 |
| Magnoliophyta | 49 | 1,664,055 | 13,730 | 90.78% | 87.44% | 0.96 |
| Spermatophyta | 50 | 1,730,687 | 14,567 | 94.42% | 92.77% | 0.98 |
| Tracheophyta | 51 | 1,752,972 | 15,673 | 95.63% | 99.82% | 1.04 |
| Embryophyta | 53 | 1,805,185 | 15,693 | 98.48% | 99.94% | 1.01 |
| Chlorophyta | 2 | 27,844 | 9 | 1.52% | 0.06% | 0.04 |
| Viridiplantae | 55 | 1,833,029 | 15,702 | 100% | 100% | 1 |