Overview Functional Clusters: Physcomitrium patens top

Overview

Organism
Physcomitrium patens
Overview
Chromosomal overview

Data

Cluster id E-value Cluster size Chromosome Identifier GO Type Description
CH_ppa_1 4.8308e-19 8 Chr23 GO:0045735 MF nutrient reservoir activity
CH_ppa_2 0.0000000000000493296 9 Chr01 GO:0030001 BP metal ion transport
CH_ppa_3 0.00000000000656247 8 Chr25 GO:0030001 BP metal ion transport
CH_ppa_4 0.00000000000709515 27 scaffold_32 GO:0006139 BP nucleobase-containing compound metabolic process
CH_ppa_5 0.000000000377394 9 Chr26 GO:0006979 BP response to oxidative stress
CH_ppa_6 0.000000000542047 6 Chr14 GO:0009664 BP plant-type cell wall organization
CH_ppa_7 0.000000000851359 7 Chr02 GO:0009765 BP photosynthesis, light harvesting
CH_ppa_8 0.0000000010856 7 Chr07 GO:0003924 MF GTPase activity
CH_ppa_9 0.00000000376859 5 Chr10 GO:0009765 BP photosynthesis, light harvesting
CH_ppa_10 0.0000000139563 17 scaffold_30 GO:0016021 CC integral component of membrane
CH_ppa_11 0.0000000145717 6 Chr09 GO:0016779 MF nucleotidyltransferase activity
CH_ppa_12 0.0000000182459 4 Chr26 GO:0004089 MF carbonate dehydratase activity
CH_ppa_13 0.0000000438943 5 Chr01 GO:0003746 MF translation elongation factor activity
CH_ppa_14 0.0000000593847 7 Chr02 GO:0005840 CC ribosome
CH_ppa_15 0.0000000738351 4 Chr22 GO:0030286 CC dynein complex
CH_ppa_16 0.0000000771616 4 Chr19 GO:0004013 MF adenosylhomocysteinase activity
CH_ppa_17 0.0000000851748 4 Chr15 GO:0016702 MF oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
CH_ppa_18 0.000000103474 4 Chr21 GO:0032012 BP regulation of ARF protein signal transduction
CH_ppa_19 0.000000169685 15 scaffold_30 GO:0050789 BP regulation of biological process
CH_ppa_20 0.000000338842 5 Chr03 GO:0043531 MF ADP binding
CH_ppa_21 0.000000473061 3 Chr01 GO:0042773 BP ATP synthesis coupled electron transport
CH_ppa_22 0.000000493681 4 Chr06 GO:0010411 BP xyloglucan metabolic process
CH_ppa_23 0.000000788338 3 Chr22 GO:0004478 MF methionine adenosyltransferase activity
CH_ppa_24 0.00000173234 4 Chr17 GO:0045735 MF nutrient reservoir activity
CH_ppa_25 0.00000189192 3 Chr21 GO:0030136 CC clathrin-coated vesicle
CH_ppa_26 0.00000199847 5 Chr10 GO:0016779 MF nucleotidyltransferase activity
CH_ppa_27 0.00000280586 4 Chr06 GO:0000786 CC nucleosome
CH_ppa_28 0.00000315282 3 Chr22 GO:0015706 BP nitrate transport
CH_ppa_29 0.0000049547 3 Chr11 GO:0030130 CC clathrin coat of trans-Golgi network vesicle
CH_ppa_30 0.00000868279 9 Chr06 GO:0003677 MF DNA binding
CH_ppa_31 0.0000102465 3 Chr21 GO:0006559 BP L-phenylalanine catabolic process
CH_ppa_32 0.0000118832 6 Chr13 GO:0043531 MF ADP binding
CH_ppa_33 0.0000123838 3 Chr22 GO:0051260 BP protein homooligomerization
CH_ppa_34 0.0000132346 4 Chr21 GO:0044436 CC thylakoid part
CH_ppa_35 0.0000164547 4 Chr07 GO:0003777 MF microtubule motor activity
CH_ppa_36 0.0000185726 3 Chr21 GO:0004807 MF triose-phosphate isomerase activity
CH_ppa_37 0.0000205781 3 Chr16 GO:0006662 BP glycerol ether metabolic process
CH_ppa_38 0.0000231171 6 Chr04 GO:0009765 BP photosynthesis, light harvesting
CH_ppa_39 0.0000247617 3 Chr20 GO:0009228 BP thiamine biosynthetic process
CH_ppa_40 0.0000247617 3 Chr23 GO:0009228 BP thiamine biosynthetic process
CH_ppa_41 0.0000253144 3 Chr09 GO:0030244 BP cellulose biosynthetic process
CH_ppa_42 0.0000295928 4 Chr03 GO:0004427 MF inorganic diphosphatase activity
CH_ppa_43 0.0000336999 3 Chr19 GO:0006357 BP regulation of transcription from RNA polymerase II promoter
CH_ppa_44 0.0000355405 4 Chr19 GO:0016747 MF transferase activity, transferring acyl groups other than amino-acyl groups
CH_ppa_45 0.0000368393 14 scaffold_30 GO:0016491 MF oxidoreductase activity
CH_ppa_46 0.0000418299 4 Chr18 GO:0007010 BP cytoskeleton organization
CH_ppa_47 0.0000439743 4 Chr05 GO:0030599 MF pectinesterase activity
CH_ppa_48 0.0000612726 2 Chr10 GO:0004535 MF poly(A)-specific ribonuclease activity
CH_ppa_49 0.0000612726 2 Chr15 GO:0016428 MF tRNA (cytosine-5-)-methyltransferase activity
CH_ppa_50 0.0000612726 2 Chr06 GO:0004484 MF mRNA guanylyltransferase activity
CH_ppa_51 0.0000612726 2 scaffold_42 GO:0050532 MF 2-phosphosulfolactate phosphatase activity
CH_ppa_52 0.0000612726 2 Chr21 GO:0000055 BP ribosomal large subunit export from nucleus
CH_ppa_53 0.0000612726 2 Chr07 GO:0004451 MF isocitrate lyase activity
CH_ppa_54 0.0000612726 2 Chr23 GO:0030148 BP sphingolipid biosynthetic process
CH_ppa_55 0.0000612726 2 Chr09 GO:0043622 BP cortical microtubule organization
CH_ppa_56 0.0000658523 3 Chr17 GO:0005743 CC mitochondrial inner membrane
CH_ppa_57 0.0000695005 3 Chr06 GO:0016702 MF oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
CH_ppa_58 0.0000695005 3 Chr14 GO:0015935 CC small ribosomal subunit
CH_ppa_59 0.0000713979 4 Chr04 GO:0009725 BP response to hormone
CH_ppa_60 0.0000837435 4 Chr08 GO:0071554 BP cell wall organization or biogenesis
CH_ppa_61 0.000101092 29 scaffold_30 GO:0008150 BP biological_process
CH_ppa_62 0.000101189 3 Chr15 GO:0030244 BP cellulose biosynthetic process
CH_ppa_63 0.0001027 7 Chr08 GO:0071555 BP cell wall organization
CH_ppa_64 0.000124749 28 scaffold_30 GO:0044699 BP single-organism process
CH_ppa_65 0.000131928 3 scaffold_70 GO:0015074 BP DNA integration
CH_ppa_66 0.000139419 4 Chr18 GO:0016879 MF ligase activity, forming carbon-nitrogen bonds
CH_ppa_67 0.000183812 2 Chr26 GO:0005674 CC transcription factor TFIIF complex
CH_ppa_68 0.000183818 2 Chr13 GO:0006499 BP N-terminal protein myristoylation
CH_ppa_69 0.000183818 2 Chr01 GO:0006429 BP leucyl-tRNA aminoacylation
CH_ppa_70 0.000183818 2 Chr13 GO:0015377 MF cation:chloride symporter activity
CH_ppa_71 0.000183818 2 Chr13 GO:0051103 BP DNA ligation involved in DNA repair
CH_ppa_72 0.000183818 2 Chr17 GO:0035246 BP peptidyl-arginine N-methylation
CH_ppa_73 0.000183818 2 Chr03 GO:0009904 BP chloroplast accumulation movement
CH_ppa_74 0.000183818 2 Chr14 GO:0004506 MF squalene monooxygenase activity
CH_ppa_75 0.000183818 2 Chr26 GO:0009013 MF succinate-semialdehyde dehydrogenase [NAD(P)+] activity
CH_ppa_76 0.000183818 2 Chr09 GO:0004585 MF ornithine carbamoyltransferase activity
CH_ppa_77 0.000183818 2 Chr24 GO:0008836 MF diaminopimelate decarboxylase activity
CH_ppa_78 0.000183818 2 Chr02 GO:0005666 CC DNA-directed RNA polymerase III complex
CH_ppa_79 0.000183818 2 Chr04 GO:0048208 BP COPII vesicle coating
CH_ppa_80 0.000183818 2 Chr01 GO:1990316 CC ATG1/ULK1 kinase complex
CH_ppa_81 0.000193816 14 scaffold_34 GO:0006810 BP transport
CH_ppa_82 0.000205523 3 Chr04 GO:0006952 BP defense response
CH_ppa_83 0.000214847 3 Chr18 GO:0000387 BP spliceosomal snRNP assembly
CH_ppa_84 0.000335873 3 Chr27 GO:0009521 CC photosystem
CH_ppa_85 0.000341607 3 Chr21 GO:0009664 BP plant-type cell wall organization
CH_ppa_86 0.000341607 3 Chr18 GO:0009664 BP plant-type cell wall organization
CH_ppa_87 0.000367636 2 Chr12 GO:0006424 BP glutamyl-tRNA aminoacylation
CH_ppa_88 0.000367636 2 Chr11 GO:0008444 MF CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity
CH_ppa_89 0.000367636 2 Chr23 GO:0006353 BP DNA-templated transcription, termination
CH_ppa_90 0.000367636 2 Chr02 GO:0008442 MF 3-hydroxyisobutyrate dehydrogenase activity
CH_ppa_91 0.000367636 2 Chr16 GO:0004594 MF pantothenate kinase activity
CH_ppa_92 0.000367636 2 Chr11 GO:0004806 MF triglyceride lipase activity
CH_ppa_93 0.000367636 2 Chr08 GO:0030123 CC AP-3 adaptor complex
CH_ppa_94 0.000367636 2 Chr15 GO:0006306 BP DNA methylation
CH_ppa_95 0.000367636 2 Chr01 GO:0004325 MF ferrochelatase activity
CH_ppa_96 0.000367636 2 Chr11 GO:0048316 BP seed development
CH_ppa_97 0.000551426 2 Chr08 GO:0019430 BP removal of superoxide radicals
CH_ppa_98 0.000612726 2 Chr06 GO:0003968 MF RNA-directed 5'-3' RNA polymerase activity
CH_ppa_99 0.000612726 2 Chr07 GO:0006438 BP valyl-tRNA aminoacylation
CH_ppa_100 0.000612726 2 Chr17 GO:0006007 BP glucose catabolic process
CH_ppa_101 0.000612726 2 Chr25 GO:0036092 BP phosphatidylinositol-3-phosphate biosynthetic process
CH_ppa_102 0.000612726 2 Chr03 GO:0005094 MF Rho GDP-dissociation inhibitor activity
CH_ppa_103 0.000612726 2 Chr10 GO:0016851 MF magnesium chelatase activity
CH_ppa_104 0.000612726 2 Chr02 GO:0031167 BP rRNA methylation
CH_ppa_105 0.000653028 3 Chr03 GO:0046148 BP pigment biosynthetic process
CH_ppa_106 0.000731356 3 Chr16 GO:0008757 MF S-adenosylmethionine-dependent methyltransferase activity
CH_ppa_107 0.000756664 7 Chr12 GO:0065007 BP biological regulation
CH_ppa_108 0.000809631 3 Chr05 GO:0009765 BP photosynthesis, light harvesting
CH_ppa_109 0.000835262 5 Chr02 GO:0016747 MF transferase activity, transferring acyl groups other than amino-acyl groups
CH_ppa_110 0.000907722 7 Chr20 GO:0050896 BP response to stimulus
CH_ppa_111 0.000919089 2 Chr15 GO:0004869 MF cysteine-type endopeptidase inhibitor activity
CH_ppa_112 0.000919089 2 Chr09 GO:0004869 MF cysteine-type endopeptidase inhibitor activity
CH_ppa_113 0.000919089 2 Chr09 GO:0016255 BP attachment of GPI anchor to protein
CH_ppa_114 0.000919089 2 Chr12 GO:0004576 MF oligosaccharyl transferase activity
CH_ppa_115 0.000919089 2 Chr09 GO:0004014 MF adenosylmethionine decarboxylase activity
CH_ppa_116 0.000919089 2 Chr03 GO:0004634 MF phosphopyruvate hydratase activity
CH_ppa_117 0.000919089 2 Chr20 GO:0010333 MF terpene synthase activity
CH_ppa_118 0.000919089 2 Chr08 GO:0004075 MF biotin carboxylase activity
CH_ppa_119 0.000919089 2 Chr20 GO:0000276 CC mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
CH_ppa_120 0.000919089 2 Chr19 GO:0005740 CC mitochondrial envelope
CH_ppa_121 0.000971982 3 Chr02 GO:0009205 BP purine ribonucleoside triphosphate metabolic process
CH_ppa_122 0.000982534 3 Chr12 GO:0007264 BP small GTPase mediated signal transduction
CH_ppa_123 0.000982534 3 Chr04 GO:0007264 BP small GTPase mediated signal transduction

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 GO Primary GO data only. 2 30 80 0.001 X
2 GO Primary GO data only. 2 30 80 0.001 V
3 GO All GO data. 2 30 80 0.001 X
4 GO All GO data. 2 30 80 0.001 V
5 InterPro No filter applied. 2 30 80 0.001 X
6 InterPro No filter applied. 2 30 80 0.001 V