Dicots PLAZA 4.5 : Functional Clustering

Functional clusters

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Arabidopsis thaliana	Chr5	3	CH_ath_554	15	39	0.000773635
Arabidopsis thaliana	Chr2	3	CH_ath_561	14	34	0.000841146
Cajanus cajan	CcLG11	3	CH_ccaj_263	11	21	0.000675298
Eucalyptus grandis	Chr09	3	CH_egr_767	8	8	0.000347005
Erythranthe guttata	scaffold_6	3	CH_egut_184	11	11	0.000000807028
Arabidopsis thaliana	Chr5	4	CH_ath_554	15	39	0.000773635
Arabidopsis thaliana	Chr2	4	CH_ath_561	14	34	0.000841146
Cajanus cajan	CcLG11	4	CH_ccaj_263	11	21	0.000675298
Eucalyptus grandis	Chr09	4	CH_egr_767	8	8	0.000347005
Erythranthe guttata	scaffold_6	4	CH_egut_184	11	11	0.000000807028
Oryza sativa ssp. japonica	Chr3	2	CH_osa_406	12	77	0.000767451
Ricinus communis	29983	2	CH_rco_134	5	41	0.0000853332
Oryza sativa ssp. japonica	Chr3	1	CH_osa_406	12	77	0.000767451
Ricinus communis	29983	1	CH_rco_134	5	41	0.0000853332

Ontology identifier	Description	Number of clusters
GO:0000148	1,3-beta-D-glucan synthase complex	2
GO:0005887	integral component of plasma membrane	4
GO:0005901	caveola	8
GO:0009511	plasmodesmatal endoplasmic reticulum	4
GO:0009897	external side of plasma membrane	6
GO:0009925	basal plasma membrane	2
GO:0016324	apical plasma membrane	6
GO:0016328	lateral plasma membrane	4
GO:0019897	extrinsic component of plasma membrane	6
GO:0031226	intrinsic component of plasma membrane	10
GO:0043190	ATP-binding cassette (ABC) transporter complex	4
GO:0044459	plasma membrane part	2
GO:0046658	anchored component of plasma membrane	54

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value	Tandems removal
1	GO	Primary GO data only.	2	30	80	0.001	X
2	GO	Primary GO data only.	2	30	80	0.001	V
3	GO	All GO data.	2	30	80	0.001	X
4	GO	All GO data.	2	30	80	0.001	V
5	InterPro	No filter applied.	2	30	80	0.001	X
6	InterPro	No filter applied.	2	30	80	0.001	V