Multiplicon view: 4493 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
4493 24 40 7 52

Multiplicon Plot


Loading...please wait

Gene Information

Gene Family Information

Options

Draw mode Segment ordering Species

Species Chromosome First Gene Last Gene
Actinidia chinensis Chr6 Achn283321 Achn232241
Arabidopsis lyrata scaffold_3 AL3G47240 AL3G47370
Arabidopsis lyrata scaffold_7 AL7G17280 AL7G17430
Arabidopsis thaliana Chr2 AT2G15530 AT2G15620
Arabidopsis thaliana Chr4 AT4G34110 AT4G33970
Brassica oleracea C1 Bo1g007650 Bo1g007720
Brassica oleracea C3 Bo3g169150 Bo3g169280
Brassica oleracea C7 Bo7g116610 Bo7g116540
Brassica rapa A01 Brara.A00411 Brara.A00417
Brassica rapa A06 Brara.F00361 Brara.F00356
Brassica rapa A07 Brara.G00486 Brara.G00492
Brassica rapa A08 Brara.H01231 Brara.H01239
Capsella rubella scaffold_3 Carubv10015401m.g Carubv10013302m.g
Capsella rubella scaffold_7 Carubv10004368m.g Carubv10007020m.g
Chenopodium quinoa C_Quinoa_Scaffold_2370 AUR62003913 AUR62003877
Cicer arietinum Ca7 Ca_09295.g Ca_09277.g
Citrus clementina scaffold_5 Ciclev10002438m.g Ciclev10002480m.g
Citrus clementina scaffold_7 Ciclev10026687m.g Ciclev10026248m.g
Cucumis melo CM3.5_scaffold00034 MELO3C018462 MELO3C018475
Daucus carota DCARv2_Chr6 DCAR_022010 DCAR_022021
Erythranthe guttata scaffold_14 Migut.N01177 Migut.N01186
Erythranthe guttata scaffold_2 Migut.B00368 Migut.B00351
Eucalyptus grandis Chr09 Eucgr.I01129 Eucgr.I01111
Glycine max Chr01 Glyma.01G189100 Glyma.01G189600
Glycine max Chr17 Glyma.17G240300 Glyma.17G237500
Gossypium raimondii Chr05 Gorai.005G236500 Gorai.005G237700
Gossypium raimondii Chr08 Gorai.008G024200 Gorai.008G024900
Gossypium raimondii Chr09 Gorai.009G214300 Gorai.009G212000
Gossypium raimondii Chr10 Gorai.010G021900 Gorai.010G019900
Gossypium raimondii Chr13 Gorai.013G045900 Gorai.013G044200
Manihot esculenta Chromosome13 Manes.13G120400 Manes.13G124700
Nelumbo nucifera megascaffold_6 NNU_13607 NNU_13636
Petunia axillaris Peaxi162Scf00016 Peaxi162Scf00016g02127 Peaxi162Scf00016g02249
Populus trichocarpa Chr02 Potri.002G124100 Potri.002G126000
Schrenkiella parvula ch3-5 Tp3g28780 Tp3g28890
Schrenkiella parvula ch7-5 Tp7g31820 Tp7g31700
Solanum lycopersicum SL2.50ch01 Solyc01g107870.2 Solyc01g107740.2
Tarenaya hassleriana NW_010963495.1 THA.LOC104807837 THA.LOC104807270
Theobroma cacao NC_023624.1 TCA.TCM_007097 TCA.TCM_007067
Vitis vinifera chr18 GSVIVG01009453001 GSVIVG01009491001

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
4490 24 39 23 55

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
305597 2 2 14 36
309555 2 2 14 44
365355 2 2 12 33
448192 2 2 10 25
476655 2 2 10 51
539372 2 2 9 46
717132 2 2 7 29
725966 2 2 7 32
822625 2 2 6 23
829163 2 2 6 24
856916 2 2 6 26
877194 2 2 6 33
1036112 2 2 5 23
1090024 2 2 5 35
1094851 2 2 5 51