Multiplicon view: 4489 (Experiment Id: 1)   top

The Multiplicon view displays the aligned gene strings of a set of homologous segments.

Multiplicon Information

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
4489 24 38 14 75

Multiplicon Plot


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Gene Information

Gene Family Information

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Draw mode Segment ordering Species

Species Chromosome First Gene Last Gene
Actinidia chinensis Chr6 Achn283501 Achn232261
Arabidopsis lyrata scaffold_3 AL3G47250 AL3G47430
Arabidopsis lyrata scaffold_7 AL7G17280 AL7G17470
Arabidopsis thaliana Chr2 AT2G15500 AT2G15630
Arabidopsis thaliana Chr4 AT4G34110 AT4G33945
Brassica oleracea C1 Bo1g007650 Bo1g007750
Brassica oleracea C3 Bo3g169150 Bo3g169300
Brassica oleracea C7 Bo7g116610 Bo7g116520
Brassica rapa A01 Brara.A00411 Brara.A00420
Brassica rapa A06 Brara.F00361 Brara.F00356
Brassica rapa A08 Brara.H01231 Brara.H01240
Capsella rubella scaffold_3 Carubv10015401m.g Carubv10015395m.g
Capsella rubella scaffold_7 Carubv10004368m.g Carubv10006351m.g
Chenopodium quinoa C_Quinoa_Scaffold_2370 AUR62003918 AUR62003877
Cicer arietinum Ca7 Ca_09297.g Ca_09277.g
Citrus clementina scaffold_5 Ciclev10000537m.g Ciclev10000967m.g
Citrus clementina scaffold_7 Ciclev10025085m.g Ciclev10024774m.g
Cucumis melo CM3.5_scaffold00034 MELO3C018462 MELO3C018475
Daucus carota DCARv2_Chr6 DCAR_022009 DCAR_022021
Erythranthe guttata scaffold_14 Migut.N01177 Migut.N01187
Erythranthe guttata scaffold_2 Migut.B00368 Migut.B00348
Eucalyptus grandis Chr09 Eucgr.I01129 Eucgr.I01111
Glycine max Chr01 Glyma.01G188900 Glyma.01G189600
Gossypium raimondii Chr05 Gorai.005G236500 Gorai.005G237900
Gossypium raimondii Chr08 Gorai.008G024200 Gorai.008G025000
Gossypium raimondii Chr09 Gorai.009G214500 Gorai.009G211700
Gossypium raimondii Chr10 Gorai.010G022200 Gorai.010G019800
Gossypium raimondii Chr13 Gorai.013G046000 Gorai.013G043800
Manihot esculenta Chromosome13 Manes.13G120100 Manes.13G125000
Nelumbo nucifera megascaffold_6 NNU_13607 NNU_13636
Petunia axillaris Peaxi162Scf00016 Peaxi162Scf00016g02127 Peaxi162Scf00016g02249
Populus trichocarpa Chr02 Potri.002G124200 Potri.002G126250
Schrenkiella parvula ch3-5 Tp3g28580 Tp3g28930
Schrenkiella parvula ch7-5 Tp7g31820 Tp7g31680
Solanum lycopersicum SL2.50ch01 Solyc01g107870.2 Solyc01g107740.2
Tarenaya hassleriana NW_010963495.1 THA.LOC104807837 THA.LOC104807270
Theobroma cacao NC_023624.1 TCA.TCM_007098 TCA.TCM_007062
Vitis vinifera chr18 GSVIVG01009444001 GSVIVG01009496001

This multiplicon is a higher level multiplicon, indicating that it contains more segments than it's parental multiplicon.
To explore the parental multiplicon, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
4384 24 37 39 63

This multiplicon is a lower level multiplicon with child multiplicons, indicating that there are multiplicons with more colinear segments in the same genomic region.
To explore the child multiplicons, view the multiplicon in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
4490 24 39 23 55
4494 25 39 22 74
4495 25 39 13 57

This multiplicon is not redundant, but is the parent of one or more redundant multiplicons.
To explore these redundant reduced colinear regions, view the redundant multiplicon(s) in the table below.

Multiplicon Id #Species #Segments #Anchorpoints Profile Length
67136 2 2 121 291
84209 2 2 61 341
89744 2 2 54 274
97561 2 2 47 230
97926 2 2 47 259
101972 2 2 44 229
109600 2 2 40 243
116266 2 2 37 261
200473 2 2 21 155
210548 2 2 20 131
254888 2 2 17 119
470504 2 2 10 63
474260 2 2 10 62
632875 2 2 8 92
736577 2 2 7 44
887331 2 2 6 43
899762 2 2 6 82
1062057 2 2 5 31