Dicots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Prupe.4G268200	Prunus persica	HOM04D006988	ORTHO04D008607	4.7e-49	196.4	96	100.0
Prupe.1G423100	Prunus persica	HOM04D006988	ORTHO04D008607	9.0e-16	85.9	50	84.0
ZJU.LOC107433689	Ziziphus jujuba	HOM04D006988	ORTHO04D008607	2.6e-15	84.3	53	73.6
COL.COLO4_28509	Corchorus olitorius	HOM04D006988	ORTHO04D008607	4.5e-15	83.6	86	54.7
TCA.TCM_034701	Theobroma cacao	HOM04D006988	ORTHO04D008607	9.9e-15	82.4	86	55.8
Gorai.009G219800	Gossypium raimondii	HOM04D006988	ORTHO04D008607	2.1e-12	74.7	66	62.1
Cpa.g.c34911	Carica papaya	HOM04D006988	ORTHO04D008607	1.8e-11	71.6	86	46.5
Cla022626.g	Citrullus lanatus	HOM04D006988	ORTHO04D008607	8.7e-11	69.3	51	66.7
C.cajan_09365.g	Cajanus cajan	HOM04D006988	ORTHO04D008607	1.1e-10	68.9	54	68.5
Cucsa.395640	Cucumis sativus L.	HOM04D006988	ORTHO04D008607	1.1e-10	68.9	50	68.0
MELO3C010807	Cucumis melo	HOM04D006988	ORTHO04D008607	1.1e-10	68.9	50	68.0
HBR0436G022	Hevea brasiliensis	HOM04D006988	ORTHO04D008607	1.5e-10	68.6	64	60.9
Manes.18G046400	Manihot esculenta	HOM04D006988	ORTHO04D008607	1.5e-10	68.6	51	66.7
HBR3544G066	Hevea brasiliensis	HOM04D006988	ORTHO04D008607	1.9e-10	68.2	64	60.9
Pbr021964.1.g	Pyrus bretschneideri	HOM04D006988	ORTHO04D008607	2.5e-10	67.8	51	64.7
Pbr021965.1.g	Pyrus bretschneideri	HOM04D006988	ORTHO04D008607	3.3e-10	67.4	51	64.7
AH008388	Amaranthus hypochondriacus	HOM04D006988	ORTHO04D008607	4.3e-10	67.0	56	62.5
Glyma.04G045200	Glycine max	HOM04D006988	ORTHO04D008607	4.3e-10	67.0	87	49.4
TPR.G3793	Trifolium pratense	HOM04D006988	ORTHO04D008607	7.4e-10	66.2	67	62.7
FVE02570	Fragaria vesca	HOM04D006988	ORTHO04D008607	7.4e-10	66.2	53	66.0
Ciclev10001602m.g	Citrus clementina	HOM04D006988	ORTHO04D008607	1.6e-09	65.1	51	62.7
Medtr1g018140	Medicago truncatula	HOM04D006988	ORTHO04D008607	2.1e-09	64.7	87	50.6
Gorai.010G025800	Gossypium raimondii	HOM04D006988	ORTHO04D008607	2.8e-09	64.3	50	64.0
Potri.014G016200	Populus trichocarpa	HOM04D006988	ORTHO04D008607	1.1e-08	62.4	64	59.4
Glyma.06G045700	Glycine max	HOM04D006988	ORTHO04D008607	1.4e-08	62.0	91	48.4
C.cajan_28930.g	Cajanus cajan	HOM04D006988	ORTHO04D008607	1.4e-08	62.0	51	68.6
Eucgr.F00082	Eucalyptus grandis	HOM04D006988	ORTHO04D008607	1.8e-08	61.6	48	64.6
Achn299391	Actinidia chinensis	HOM04D006988	ORTHO04D008607	1.8e-08	61.6	52	61.5
Potri.002G118700	Populus trichocarpa	HOM04D006988	ORTHO04D008607	1.8e-08	61.6	67	55.2
Glyma.14G088700	Glycine max	HOM04D006988	ORTHO04D008607	2.4e-08	61.2	53	64.2
Cc10_g05770	Coffea canephora	HOM04D006988	ORTHO04D008607	2.0e-07	58.2	54	64.8
CAN.G724.25	Capsicum annuum	HOM04D006988	ORTHO04D008607	5.8e-07	56.6	54	57.4
NNU_13750	Nelumbo nucifera	HOM04D006988	ORTHO04D008607	2.9e-06	54.3	58	55.2
Pbr019748.1.g	Pyrus bretschneideri	HOM04D006988	ORTHO04D008607	8.4e-06	52.8	47	57.4
GSVIVG01009345001	Vitis vinifera	HOM04D006988	ORTHO04D008607	8.4e-06	52.8	61	52.5

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment