Dicots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
MDO.mRNA.g.171.2	Malus domestica	HOM04D002188	ORTHO04D026330	4.7e-49	196.4	95	100.0
MELO3C019475	Cucumis melo	HOM04D002188	ORTHO04D002609	3.6e-25	117.1	67	85.1
Cucsa.033110	Cucumis sativus L.	HOM04D002188	ORTHO04D002609	4.7e-25	116.7	67	86.6
Cpa.g.sc32.50	Carica papaya	HOM04D002188	ORTHO04D002609	6.1e-25	116.3	67	85.1
Prupe.1G570400	Prunus persica	HOM04D002188	ORTHO04D002609	1.0e-24	115.5	67	85.1
Prupe.1G570500	Prunus persica	HOM04D002188	ORTHO04D002609	1.0e-24	115.5	67	85.1
Cla013038.g	Citrullus lanatus	HOM04D002188	ORTHO04D002609	1.0e-24	115.5	67	85.1
HBR3419G004	Hevea brasiliensis	HOM04D002188	ORTHO04D002609	1.0e-24	115.5	67	85.1
Manes.10G128600	Manihot esculenta	HOM04D002188	ORTHO04D002609	1.4e-24	115.2	67	85.1
Ciclev10001773m.g	Citrus clementina	HOM04D002188	ORTHO04D002609	1.4e-24	115.2	67	82.1
FVE10883	Fragaria vesca	HOM04D002188	ORTHO04D002609	1.8e-24	114.8	67	86.6
Eucgr.I02726	Eucalyptus grandis	HOM04D002188	ORTHO04D002609	5.2e-24	113.2	61	90.2
Cucsa.049580	Cucumis sativus L.	HOM04D002188	ORTHO04D002609	2.0e-23	111.3	66	83.3
RCO.g.30071.000020	Ricinus communis	HOM04D002188	ORTHO04D002609	1.3e-22	108.6	67	82.1
Achn223971	Actinidia chinensis	HOM04D002188	ORTHO04D002609	2.2e-22	107.8	67	83.6
ZJU.LOC107427774	Ziziphus jujuba	HOM04D002188	ORTHO04D002609	2.9e-22	107.5	67	76.1
Potri.001G211500	Populus trichocarpa	HOM04D002188	ORTHO04D002609	2.9e-22	107.5	67	80.6
TCA.TCM_006911	Theobroma cacao	HOM04D002188	ORTHO04D002609	1.1e-21	105.5	67	76.1
PGSC0003DMG400031113	Solanum tuberosum	HOM04D002188	ORTHO04D002609	1.1e-21	105.5	67	80.6
Gorai.013G037900	Gossypium raimondii	HOM04D002188	ORTHO04D002609	1.1e-21	105.5	67	76.1
COL.COLO4_11789	Corchorus olitorius	HOM04D002188	ORTHO04D002609	3.2e-21	104.0	67	74.6
Peaxi162Scf00907g00001	Petunia axillaris	HOM04D002188	ORTHO04D002609	4.1e-21	103.6	67	77.6
DCAR_006707	Daucus carota	HOM04D002188	ORTHO04D002609	7.0e-21	102.8	67	76.1
AH005329	Amaranthus hypochondriacus	HOM04D002188	ORTHO04D002609	1.2e-20	102.1	68	72.1
Cc02_g22550	Coffea canephora	HOM04D002188	ORTHO04D002609	1.6e-20	101.7	67	79.1
Cc02_g22560	Coffea canephora	HOM04D002188	ORTHO04D002609	1.6e-20	101.7	67	79.1
Peaxi162Scf00907g00014	Petunia axillaris	HOM04D002188	ORTHO04D002609	2.7e-20	100.9	67	76.1
Bv4_085960_kxrm	Beta vulgaris	HOM04D002188	ORTHO04D002609	3.5e-20	100.5	68	73.5
CAN.G1249.12	Capsicum annuum	HOM04D002188	ORTHO04D002609	3.5e-20	100.5	67	77.6
Solyc01g081510.2	Solanum lycopersicum	HOM04D002188	ORTHO04D002609	3.5e-20	100.5	67	77.6
TCA.TCM_006910	Theobroma cacao	HOM04D002188	ORTHO04D011073	4.6e-20	100.1	68	72.1
Pbr041963.1.g	Pyrus bretschneideri	HOM04D002188	ORTHO04D002609	1.0e-19	99.0	67	73.1
Glyma.05G169300	Glycine max	HOM04D002188	ORTHO04D002609	1.3e-19	98.6	67	70.1
Vradi07g19170	Vigna radiata var. radiata	HOM04D002188	ORTHO04D002609	1.1e-18	95.5	67	68.7
Cpa.g.sc113.56	Carica papaya	HOM04D002188	ORTHO04D002609	1.2e-17	92.0	70	65.7
UGI.Scf00007.1181	Utricularia gibba	HOM04D002188	ORTHO04D002609	2.8e-17	90.9	67	71.6
Ca_16740.g	Cicer arietinum	HOM04D002188	ORTHO04D002609	2.8e-17	90.9	65	67.7
MDO.mRNA.g.171.4	Malus domestica	HOM04D002188	ORTHO04D002609	4.7e-17	90.1	63	73.0
AUR62014258	Chenopodium quinoa	HOM04D002188	ORTHO04D002609	8.0e-17	89.4	70	61.4
Medtr8g088900	Medicago truncatula	HOM04D002188	ORTHO04D002609	1.0e-16	89.0	67	64.2
AH011534	Amaranthus hypochondriacus	HOM04D002188	ORTHO04D002609	5.2e-16	86.7	58	70.7
Migut.B00832	Erythranthe guttata	HOM04D002188	ORTHO04D002609	6.8e-16	86.3	68	67.6
AUR62038480	Chenopodium quinoa	HOM04D002188	ORTHO04D002609	8.9e-16	85.9	72	61.1
C.cajan_20448.g	Cajanus cajan	HOM04D002188	ORTHO04D002609	3.4e-15	84.0	67	62.7
NNU_06578	Nelumbo nucifera	HOM04D002188	ORTHO04D002609	4.4e-15	83.6	67	61.2
Ciclev10001947m.g	Citrus clementina	HOM04D002188	ORTHO04D002609	7.5e-15	82.8	67	61.2
GSVIVG01022917001	Vitis vinifera	HOM04D002188	ORTHO04D002609	7.0e-13	76.3	43	83.7
PAB00062181	Picea abies	HOM04D002188	ORTHO04D002609	4.6e-12	73.6	67	56.7
Tp5g26340	Schrenkiella parvula	HOM04D002188	ORTHO04D002609	4.6e-12	73.6	67	56.7
PAB00062180	Picea abies	HOM04D002188	ORTHO04D002609	1.7e-11	71.6	67	56.7
THA.LOC104822173	Tarenaya hassleriana	HOM04D002188	ORTHO04D002609	1.5e-10	68.6	67	53.7
Brara.B01953	Brassica rapa	HOM04D002188	ORTHO04D002609	4.3e-10	67.0	67	55.2
AT1G71180	Arabidopsis thaliana	HOM04D002188	ORTHO04D002609	4.3e-10	67.0	67	52.2
AL2G30790	Arabidopsis lyrata	HOM04D002188	ORTHO04D002609	4.3e-10	67.0	67	52.2
Bo7g080660	Brassica oleracea	HOM04D002188	ORTHO04D002609	9.5e-10	65.9	67	52.2
AT1G71170	Arabidopsis thaliana	HOM04D002188	ORTHO04D002609	9.5e-10	65.9	67	52.2
Carubv10021401m.g	Capsella rubella	HOM04D002188	ORTHO04D002609	9.5e-10	65.9	67	53.7
LOC_Os05g49070	Oryza sativa ssp. japonica	HOM04D002188	ORTHO04D002609	3.6e-09	63.9	67	47.8
AL2G30780	Arabidopsis lyrata	HOM04D002188	ORTHO04D002609	8.1e-09	62.8	67	49.3
Zm00001d009582	Zea mays	HOM04D002188	ORTHO04D002609	1.4e-08	62.0	65	52.3
COL.COLO4_15119	Corchorus olitorius	HOM04D002188	ORTHO04D026330	4.9e-06	53.5	33	72.7

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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