Dicots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Glyma.01G092700	Glycine max	HOM04D006474	ORTHO04D007696	1.2e-40	168.3	84	100.0
Glyma.08G012200	Glycine max	HOM04D006474	ORTHO04D007696	4.0e-28	126.7	65	95.4
Glyma.05G087800	Glycine max	HOM04D006474	ORTHO04D007696	5.2e-28	126.3	65	95.4
Glyma.05G205300	Glycine max	HOM04D006474	ORTHO04D007696	1.7e-26	121.3	65	90.8
C.cajan_11508.g	Cajanus cajan	HOM04D006474	ORTHO04D007696	1.9e-25	117.9	65	89.2
TPR.G12841	Trifolium pratense	HOM04D006474	ORTHO04D007696	1.9e-22	107.8	65	81.5
Ca_05722.g	Cicer arietinum	HOM04D006474	ORTHO04D007696	1.6e-21	104.8	65	80.0
Medtr8g096960	Medicago truncatula	HOM04D006474	ORTHO04D007696	3.6e-21	103.6	65	78.5
Prupe.5G095100	Prunus persica	HOM04D006474	ORTHO04D007696	6.2e-21	102.8	71	69.0
Pbr011024.1.g	Pyrus bretschneideri	HOM04D006474	ORTHO04D007696	6.2e-21	102.8	71	69.0
GSVIVG01019803001	Vitis vinifera	HOM04D006474	ORTHO04D007696	2.4e-20	100.9	71	67.6
Solyc12g056350.1	Solanum lycopersicum	HOM04D006474	ORTHO04D007696	3.4e-19	97.1	84	56.0
Potri.014G154900	Populus trichocarpa	HOM04D006474	ORTHO04D007696	4.5e-19	96.7	83	56.6
CAN.G26.17	Capsicum annuum	HOM04D006474	ORTHO04D007696	4.5e-19	96.7	78	59.0
PGSC0003DMG400004251	Solanum tuberosum	HOM04D006474	ORTHO04D007696	9.9e-19	95.5	84	54.8
Peaxi162Scf01294g00327	Petunia axillaris	HOM04D006474	ORTHO04D007696	1.3e-18	95.1	78	60.3
MELO3C016345	Cucumis melo	HOM04D006474	ORTHO04D007696	1.3e-18	95.1	65	69.2
Migut.A00797	Erythranthe guttata	HOM04D006474	ORTHO04D007696	1.3e-18	95.1	78	59.0
Eucgr.D01883	Eucalyptus grandis	HOM04D006474	ORTHO04D007696	3.8e-18	93.6	66	65.2
COL.COLO4_11251	Corchorus olitorius	HOM04D006474	ORTHO04D007696	4.9e-18	93.2	78	56.4
ZJU.LOC107429939	Ziziphus jujuba	HOM04D006474	ORTHO04D007696	6.4e-18	92.8	71	60.6
THA.LOC104800995	Tarenaya hassleriana	HOM04D006474	ORTHO04D007696	3.2e-17	90.5	71	59.2
DCAR_008412	Daucus carota	HOM04D006474	ORTHO04D007696	4.2e-17	90.1	83	54.2
Ciclev10016122m.g	Citrus clementina	HOM04D006474	ORTHO04D007696	5.4e-17	89.7	71	59.2
Brara.C01653	Brassica rapa	HOM04D006474	ORTHO04D007696	7.1e-17	89.4	83	50.6
Carubv10023899m.g	Capsella rubella	HOM04D006474	ORTHO04D007696	1.2e-16	88.6	83	51.8
Bo3g026700	Brassica oleracea	HOM04D006474	ORTHO04D007696	1.6e-16	88.2	83	49.4
Cpa.g.sc39.21	Carica papaya	HOM04D006474	ORTHO04D007696	6.0e-16	86.3	77	51.9
Tp4g14850	Schrenkiella parvula	HOM04D006474	ORTHO04D007696	7.9e-16	85.9	83	49.4
AL4G27880	Arabidopsis lyrata	HOM04D006474	ORTHO04D007696	1.0e-15	85.5	83	48.2
Gorai.008G189400	Gossypium raimondii	HOM04D006474	ORTHO04D007696	1.3e-15	85.1	85	52.9
Cc08_g14300	Coffea canephora	HOM04D006474	ORTHO04D007696	8.7e-15	82.4	71	54.9
AH018659	Amaranthus hypochondriacus	HOM04D006474	ORTHO04D007696	1.1e-14	82.0	71	54.9
Bv5_100700_zcuq	Beta vulgaris	HOM04D006474	ORTHO04D007696	2.8e-13	77.4	71	53.5
ATR0680G238	Amborella trichopoda	HOM04D006474	ORTHO04D007696	8.1e-13	75.9	87	40.2
MDO.mRNA.g.408.1	Malus domestica	HOM04D006474	ORTHO04D007696	1.4e-12	75.1	60	61.7
Cucsa.106890	Cucumis sativus L.	HOM04D006474	ORTHO04D007696	3.4e-11	70.5	51	58.8
LOC_Os03g02020	Oryza sativa ssp. japonica	HOM04D006474	ORTHO04D007696	7.6e-11	69.3	71	47.9
Zm00001d048515	Zea mays	HOM04D006474	ORTHO04D007696	1.7e-10	68.2	71	45.1
PAB00044629	Picea abies	HOM04D006474	ORTHO04D007696	2.1e-08	61.2	65	41.5
Achn380191	Actinidia chinensis	HOM04D006474	ORTHO04D007696	6.7e-07	56.2	43	58.1
Achn332091	Actinidia chinensis	HOM04D006474	ORTHO04D007696	8.7e-07	55.8	43	58.1
Manes.12G073000	Manihot esculenta	HOM04D006474	ORTHO04D007696	1.1e-06	55.5	42	59.5
NNU_21048	Nelumbo nucifera	HOM04D006474	ORTHO04D007696	2.5e-06	54.3	50	52.0

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment