Dicots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Glyma.01G000800	Glycine max	HOM04D002981	ORTHO04D002712	1.0e-110	402.5	224	100.0
Glyma.17G191100	Glycine max	HOM04D002981	ORTHO04D002712	4.1e-27	124.8	107	57.9
Glyma.03G188200	Glycine max	HOM04D002981	ORTHO04D002712	5.5e-24	114.4	54	98.1
Glyma.05G115300	Glycine max	HOM04D002981	ORTHO04D002712	1.2e-23	113.2	113	50.4
Glyma.20G003900	Glycine max	HOM04D002981	ORTHO04D002712	1.4e-22	109.8	136	48.5
Glyma.01G065700	Glycine max	HOM04D002981	ORTHO04D002712	1.3e-20	103.2	56	83.9
Glyma.20G229200	Glycine max	HOM04D002981	ORTHO04D002712	6.3e-20	100.9	76	59.2
Glyma.01G061600	Glycine max	HOM04D002981	ORTHO04D002712	1.1e-19	100.1	113	45.1
Glyma.14G112300	Glycine max	HOM04D002981	ORTHO04D002712	2.4e-19	99.0	88	58.0
Glyma.16G004900	Glycine max	HOM04D002981	ORTHO04D002712	4.1e-19	98.2	104	46.2
Glyma.02G200800	Glycine max	HOM04D002981	ORTHO04D002712	5.3e-19	97.8	61	72.1
Glyma.01G093300	Glycine max	HOM04D002981	ORTHO04D002712	1.2e-18	96.7	96	51.0
Glyma.09G182900	Glycine max	HOM04D002981	ORTHO04D002712	1.6e-18	96.3	82	53.7
Glyma.04G129600	Glycine max	HOM04D002981	ORTHO04D002712	2.6e-18	95.5	79	54.4
Glyma.06G215800	Glycine max	HOM04D002981	ORTHO04D002712	5.9e-18	94.4	103	43.7
Glyma.19G072500	Glycine max	HOM04D002981	ORTHO04D002712	7.7e-18	94.0	67	58.2
Glyma.18G091400	Glycine max	HOM04D002981	ORTHO04D002712	7.7e-18	94.0	84	47.6
Glyma.13G027700	Glycine max	HOM04D002981	ORTHO04D002712	1.3e-17	93.2	91	47.3
Glyma.01G086200	Glycine max	HOM04D002981	ORTHO04D002712	1.7e-17	92.8	104	46.2
Glyma.07G170300	Glycine max	HOM04D002981	ORTHO04D002712	3.8e-17	91.7	90	47.8
Glyma.16G096100	Glycine max	HOM04D002981	ORTHO04D002712	5.0e-17	91.3	116	40.5
Glyma.05G098900	Glycine max	HOM04D002981	ORTHO04D002712	6.5e-17	90.9	131	42.0
Glyma.12G147100	Glycine max	HOM04D002981	ORTHO04D002712	6.5e-17	90.9	114	43.9
Glyma.11G172100	Glycine max	HOM04D002981	ORTHO04D002712	1.1e-16	90.1	61	60.7
Glyma.02G165200	Glycine max	HOM04D002981	ORTHO04D002712	2.5e-16	89.0	102	45.1
Glyma.06G222300	Glycine max	HOM04D002981	ORTHO04D002712	2.5e-16	89.0	59	67.8
Glyma.09G084400	Glycine max	HOM04D002981	ORTHO04D002712	2.5e-16	89.0	137	42.3
Glyma.20G058600	Glycine max	HOM04D002981	ORTHO04D002712	3.2e-16	88.6	102	44.1
Glyma.10G107600	Glycine max	HOM04D002981	ORTHO04D002712	4.2e-16	88.2	61	60.7
Glyma.10G164900	Glycine max	HOM04D002981	ORTHO04D002712	5.5e-16	87.8	60	61.7
Glyma.02G165100	Glycine max	HOM04D002981	ORTHO04D002712	7.2e-16	87.4	111	40.5
Glyma.10G128500	Glycine max	HOM04D002981	ORTHO04D002712	7.2e-16	87.4	69	56.5
Glyma.19G116800	Glycine max	HOM04D002981	ORTHO04D002712	9.4e-16	87.0	85	51.8
Glyma.04G130600	Glycine max	HOM04D002981	ORTHO04D002712	9.4e-16	87.0	62	59.7
Glyma.20G071300	Glycine max	HOM04D002981	ORTHO04D002712	1.6e-15	86.3	77	50.6
Glyma.06G268900	Glycine max	HOM04D002981	ORTHO04D002712	2.1e-15	85.9	104	44.2
Glyma.04G130700	Glycine max	HOM04D002981	ORTHO04D002712	2.1e-15	85.9	61	60.7
Glyma.15G212900	Glycine max	HOM04D002981	ORTHO04D002712	2.7e-15	85.5	108	41.7
Glyma.04G117700	Glycine max	HOM04D002981	ORTHO04D002712	2.7e-15	85.5	68	54.4
Glyma.17G204100	Glycine max	HOM04D002981	ORTHO04D002712	6.1e-15	84.3	61	57.4
Glyma.04G183000	Glycine max	HOM04D002981	ORTHO04D002712	8.0e-15	84.0	64	56.2
Glyma.10G082200	Glycine max	HOM04D002981	ORTHO04D002712	1.0e-14	83.6	61	57.4
Glyma.08G234800	Glycine max	HOM04D002981	ORTHO04D002712	3.0e-14	82.0	68	52.9
Glyma.08G234000	Glycine max	HOM04D002981	ORTHO04D002712	3.0e-14	82.0	60	60.0
Glyma.18G283000	Glycine max	HOM04D002981	ORTHO04D002712	4.0e-14	81.6	119	37.0
Glyma.07G166200	Glycine max	HOM04D002981	ORTHO04D002712	5.2e-14	81.3	106	39.6
Glyma.08G280200	Glycine max	HOM04D002981	ORTHO04D002712	5.2e-14	81.3	58	58.6
Glyma.20G048600	Glycine max	HOM04D002981	ORTHO04D002712	6.7e-14	80.9	61	57.4
Glyma.20G076800	Glycine max	HOM04D002981	ORTHO04D002712	8.8e-14	80.5	63	55.6
Glyma.04G195000	Glycine max	HOM04D002981	ORTHO04D002712	8.8e-14	80.5	64	53.1
Glyma.17G001200	Glycine max	HOM04D002981	ORTHO04D002712	1.5e-13	79.7	101	42.6
Glyma.16G099900	Glycine max	HOM04D002981	ORTHO04D002712	1.5e-13	79.7	61	57.4
Glyma.19G037300	Glycine max	HOM04D002981	ORTHO04D002712	2.6e-13	79.0	62	53.2
Glyma.01G077500	Glycine max	HOM04D002981	ORTHO04D002712	5.7e-13	77.8	44	84.1
Glyma.10G102600	Glycine max	HOM04D002981	ORTHO04D002712	9.7e-13	77.0	61	54.1
Glyma.20G227100	Glycine max	HOM04D002981	ORTHO04D002712	1.3e-12	76.6	207	31.9
Glyma.10G104400	Glycine max	HOM04D002981	ORTHO04D002712	2.2e-12	75.9	112	41.1
Glyma.01G140400	Glycine max	HOM04D002981	ORTHO04D002712	2.8e-12	75.5	51	64.7
Glyma.14G119300	Glycine max	HOM04D002981	ORTHO04D002712	8.2e-12	73.9	49	65.3
Glyma.05G111100	Glycine max	HOM04D002981	ORTHO04D002712	5.3e-11	71.2	57	59.6
Glyma.02G191700	Glycine max	HOM04D002981	ORTHO04D002712	9.1e-11	70.5	43	69.8
C.cajan_20328.g	Cajanus cajan	HOM04D002981	ORTHO04D002712	1.2e-10	70.1	58	48.3
Glyma.18G199900	Glycine max	HOM04D002981	ORTHO04D002712	1.3e-09	66.6	49	57.1
C.cajan_41451.g	Cajanus cajan	HOM04D000004	ORTHO04D000005	2.9e-09	65.5	54	57.4
C.cajan_41952.g	Cajanus cajan	HOM04D002981	ORTHO04D002712	3.8e-09	65.1	54	55.6
C.cajan_31200.g	Cajanus cajan	HOM04D000004	ORTHO04D000005	5.0e-09	64.7	66	50.0
C.cajan_21138.g	Cajanus cajan	HOM04D002981	ORTHO04D002712	8.5e-09	63.9	66	50.0
Glyma.04G131000	Glycine max	HOM04D002981	ORTHO04D002712	1.5e-08	63.2	36	80.6
Medtr5g065250	Medicago truncatula	HOM04D002981	ORTHO04D002712	7.2e-08	60.8	61	45.9
C.cajan_04996.g	Cajanus cajan	HOM04D002981	ORTHO04D002712	7.2e-08	60.8	53	47.2
Glyma.05G167400	Glycine max	HOM04D002981	ORTHO04D002712	1.6e-07	59.7	46	54.3
Glyma.15G166300	Glycine max	HOM04D002981	ORTHO04D002712	1.0e-06	57.0	43	60.5
Medtr7g108440	Medicago truncatula	HOM04D000004	ORTHO04D002712	4.0e-06	55.1	66	40.9
Medtr5g054740	Medicago truncatula	HOM04D007801	ORTHO04D010376	5.2e-06	54.7	88	35.2
Medtr5g048260	Medicago truncatula	HOM04D007801	ORTHO04D002712	6.8e-06	54.3	66	42.4

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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