Dicots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Glyma.01G000100	Glycine max	HOM04D003133	ORTHO04D020590	2.4e-54	214.2	105	100.0
Glyma.03G000400	Glycine max	HOM04D003133	ORTHO04D020590	3.8e-52	206.8	105	97.1
Glyma.15G276800	Glycine max	HOM04D003133	ORTHO04D004759	1.7e-39	164.9	111	77.5
Vradi05g17030	Vigna radiata var. radiata	HOM04D003133	ORTHO04D004759	1.8e-33	144.8	111	66.7
Medtr8g069840	Medicago truncatula	HOM04D003133	ORTHO04D004759	2.3e-28	127.9	111	58.6
Araip.QD757	Arachis ipaensis	HOM04D003133	ORTHO04D004759	7.3e-27	122.9	106	58.5
Ca_15875.g	Cicer arietinum	HOM04D003133	ORTHO04D004759	2.3e-20	101.3	89	61.8
Manes.14G092500	Manihot esculenta	HOM04D003133	ORTHO04D004759	2.1e-18	94.7	111	44.1
HBR2902G097	Hevea brasiliensis	HOM04D003133	ORTHO04D004759	2.0e-16	88.2	111	44.1
Potri.010G135500	Populus trichocarpa	HOM04D003133	ORTHO04D004759	4.4e-16	87.0	107	44.9
Prupe.1G298000	Prunus persica	HOM04D003133	ORTHO04D004759	8.3e-15	82.8	108	41.7
RCO.g.30138.000043	Ricinus communis	HOM04D003133	ORTHO04D004759	1.9e-14	81.6	111	45.0
TCA.TCM_011392	Theobroma cacao	HOM04D003133	ORTHO04D004759	4.1e-14	80.5	108	45.4
Cla020332.g	Citrullus lanatus	HOM04D003133	ORTHO04D004759	4.1e-14	80.5	111	39.6
Cucsa.284260	Cucumis sativus L.	HOM04D003133	ORTHO04D004759	4.1e-14	80.5	111	40.5
Achn072941	Actinidia chinensis	HOM04D003133	ORTHO04D004759	1.6e-13	78.6	115	38.3
Migut.L01140	Erythranthe guttata	HOM04D003133	ORTHO04D004759	6.0e-13	76.6	104	38.5
Gorai.005G148400	Gossypium raimondii	HOM04D003133	ORTHO04D004759	1.7e-12	75.1	107	43.9
COL.COLO4_27762	Corchorus olitorius	HOM04D003133	ORTHO04D004759	1.7e-12	75.1	104	44.2
Ciclev10030492m.g	Citrus clementina	HOM04D003133	ORTHO04D004759	1.7e-12	75.1	111	40.5
AT1G68890	Arabidopsis thaliana	HOM04D003133	ORTHO04D004759	3.9e-12	73.9	105	42.9
ZJU.LOC107429107	Ziziphus jujuba	HOM04D003133	ORTHO04D004759	5.0e-12	73.6	108	38.0
Cc11_g11300	Coffea canephora	HOM04D003133	ORTHO04D004759	6.6e-12	73.2	102	44.1
Carubv10021453m.g	Capsella rubella	HOM04D003133	ORTHO04D004759	8.6e-12	72.8	107	43.9
GSVIVG01010139001	Vitis vinifera	HOM04D003133	ORTHO04D004759	1.5e-11	72.0	108	42.6
Bo2g062420	Brassica oleracea	HOM04D003133	ORTHO04D004759	2.5e-11	71.2	105	42.9
CAN.G263.2	Capsicum annuum	HOM04D003133	ORTHO04D004759	4.3e-11	70.5	111	36.9
THA.LOC104821983	Tarenaya hassleriana	HOM04D003133	ORTHO04D004759	5.6e-11	70.1	104	39.4
AUR62007840	Chenopodium quinoa	HOM04D003133	ORTHO04D004759	7.3e-11	69.7	112	32.1
Brara.B01825	Brassica rapa	HOM04D003133	ORTHO04D004759	7.3e-11	69.7	105	41.9
Solyc04g005190.2	Solanum lycopersicum	HOM04D003133	ORTHO04D004759	1.2e-10	68.9	111	36.0
Bv6_140260_turn	Beta vulgaris	HOM04D003133	ORTHO04D004759	2.1e-10	68.2	101	35.6
DCAR_023734	Daucus carota	HOM04D003133	ORTHO04D004759	2.1e-10	68.2	106	36.8
Peaxi162Scf00396g01321	Petunia axillaris	HOM04D003133	ORTHO04D004759	2.8e-10	67.8	111	36.9
NNU_04378	Nelumbo nucifera	HOM04D003133	ORTHO04D004759	1.4e-09	65.5	88	40.9
Achn170921	Actinidia chinensis	HOM04D003133	ORTHO04D020590	1.8e-09	65.1	101	37.6
AUR62003034	Chenopodium quinoa	HOM04D003133	ORTHO04D004759	1.8e-09	65.1	116	32.8
FVE04506	Fragaria vesca	HOM04D003133	ORTHO04D004759	4.0e-09	63.9	104	36.5
MDO.mRNA.g.791.9	Malus domestica	HOM04D003133	ORTHO04D004759	5.8e-08	60.1	96	38.5
Pbr013207.1.g	Pyrus bretschneideri	HOM04D003133	ORTHO04D004759	1.4e-06	55.5	59	47.5
Eucgr.G02402	Eucalyptus grandis	HOM04D003133	ORTHO04D004759	4.1e-06	53.9	110	31.8
Cc11_g11330	Coffea canephora	HOM04D003133	ORTHO04D004759	5.4e-06	53.5	111	32.4

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment