Dicots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Ciclev10010049m.g	Citrus clementina	HOM04D000066	ORTHO04D075460	5.3e-39	162.9	88	100.0
Ciclev10012469m.g	Citrus clementina	HOM04D000066	ORTHO04D005984	1.4e-36	154.8	88	95.5
Ciclev10029697m.g	Citrus clementina	HOM04D000066	ORTHO04D075452	3.2e-36	153.7	88	95.5
Potri.016G024800	Populus trichocarpa	HOM04D000066	ORTHO04D005984	2.0e-14	81.3	78	61.5
RCO.g.30045.000022	Ricinus communis	HOM04D000066	ORTHO04D005984	1.1e-12	75.5	78	59.0
HBR2576G013	Hevea brasiliensis	HOM04D000066	ORTHO04D005984	1.1e-12	75.5	96	52.1
HBR2860G008	Hevea brasiliensis	HOM04D000066	ORTHO04D005984	1.5e-12	75.1	79	62.0
HBR2857G005	Hevea brasiliensis	HOM04D000066	ORTHO04D005984	1.9e-12	74.7	90	54.4
Manes.02G219500	Manihot esculenta	HOM04D000066	ORTHO04D005984	1.9e-12	74.7	90	55.6
TCA.TCM_024161	Theobroma cacao	HOM04D000066	ORTHO04D005984	3.2e-12	73.9	80	60.0
CAN.G128.107	Capsicum annuum	HOM04D000066	ORTHO04D005984	5.5e-12	73.2	88	54.5
PGSC0003DMG400028110	Solanum tuberosum	HOM04D000066	ORTHO04D005984	2.1e-11	71.2	88	54.5
Solyc10g081160.1	Solanum lycopersicum	HOM04D000066	ORTHO04D005984	3.6e-11	70.5	88	53.4
Manes.09G074400	Manihot esculenta	HOM04D000066	ORTHO04D005984	4.7e-11	70.1	76	59.2
Potri.006G026900	Populus trichocarpa	HOM04D000066	ORTHO04D005984	1.0e-10	68.9	87	52.9
FVE10224	Fragaria vesca	HOM04D000066	ORTHO04D005984	3.0e-10	67.4	90	55.6
Cc06_g22700	Coffea canephora	HOM04D000066	ORTHO04D005984	6.7e-10	66.2	83	54.2
Cla012166.g	Citrullus lanatus	HOM04D000066	ORTHO04D005984	1.5e-09	65.1	75	54.7
AUR62018450	Chenopodium quinoa	HOM04D000066	ORTHO04D005984	2.0e-09	64.7	98	48.0
AUR62044412	Chenopodium quinoa	HOM04D000066	ORTHO04D005984	2.0e-09	64.7	98	48.0
Eucgr.K01701	Eucalyptus grandis	HOM04D000066	ORTHO04D005984	2.6e-09	64.3	88	48.9
Gorai.007G350800	Gossypium raimondii	HOM04D000066	ORTHO04D005984	7.5e-09	62.8	85	52.9
DCAR_013516	Daucus carota	HOM04D000066	ORTHO04D005984	7.5e-09	62.8	88	48.9
C.cajan_45449.g	Cajanus cajan	HOM04D000066	ORTHO04D005984	2.2e-08	61.2	81	55.6
COL.COLO4_22768	Corchorus olitorius	HOM04D000066	ORTHO04D005984	2.2e-08	61.2	86	53.5
Pbr039044.1.g	Pyrus bretschneideri	HOM04D000066	ORTHO04D005984	4.8e-08	60.1	81	55.6
C.cajan_18082.g	Cajanus cajan	HOM04D000066	ORTHO04D005984	6.3e-08	59.7	84	58.3
Ca_08154.g	Cicer arietinum	HOM04D000066	ORTHO04D005984	8.3e-08	59.3	83	50.6
Peaxi162Scf00153g01027	Petunia axillaris	HOM04D000066	ORTHO04D005984	1.1e-07	58.9	75	56.0
GSVIVG01025833001	Vitis vinifera	HOM04D000066	ORTHO04D005984	5.3e-07	56.6	72	52.8
Glyma.19G072800	Glycine max	HOM04D000066	ORTHO04D005984	7.0e-07	56.2	82	52.4
Bv4_097550_axpp	Beta vulgaris	HOM04D000066	ORTHO04D065021	2.0e-06	54.7	95	45.3
ZJU.LOC107423515	Ziziphus jujuba	HOM04D000066	ORTHO04D005984	2.0e-06	54.7	87	44.8
DCAR_020624	Daucus carota	HOM04D000066	ORTHO04D005984	3.5e-06	53.9	90	47.8
AH006578	Amaranthus hypochondriacus	HOM04D000066	ORTHO04D005984	4.5e-06	53.5	88	40.9
MELO3C026341	Cucumis melo	HOM04D000066	ORTHO04D005984	4.5e-06	53.5	74	54.1
Prupe.7G024400	Prunus persica	HOM04D000066	ORTHO04D005984	5.9e-06	53.1	88	46.6
Migut.J01570	Erythranthe guttata	HOM04D000066	ORTHO04D005984	7.7e-06	52.8	88	53.4

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment