Dicots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Brara.G02195	Brassica rapa	HOM04D008718	ORTHO04D010073	4.3e-65	250.8	195	100.0
Bo6g120200	Brassica oleracea	HOM04D008718	ORTHO04D010073	4.0e-31	137.9	199	73.9
Tp5g31320	Schrenkiella parvula	HOM04D008718	ORTHO04D010073	2.6e-30	135.2	168	69.6
Carubv10020984m.g	Capsella rubella	HOM04D008718	ORTHO04D010073	1.7e-29	132.5	156	73.7
Brara.G03414	Brassica rapa	HOM04D008718	ORTHO04D010073	1.1e-28	129.8	161	70.2
Brara.B02255	Brassica rapa	HOM04D008718	ORTHO04D010073	4.2e-28	127.9	166	72.3
AT1G76180	Arabidopsis thaliana	HOM04D008718	ORTHO04D010073	1.2e-19	99.8	84	75.0
AL2G36240	Arabidopsis lyrata	HOM04D008718	ORTHO04D010073	6.1e-19	97.4	86	73.3
THA.LOC104809672	Tarenaya hassleriana	HOM04D008718	ORTHO04D010073	1.6e-16	89.4	145	64.1
THA.LOC104813763	Tarenaya hassleriana	HOM04D008718	ORTHO04D010073	3.4e-14	81.6	158	59.5
AL1G33370	Arabidopsis lyrata	HOM04D008718	ORTHO04D010073	1.7e-13	79.3	173	54.9
Brara.G01101	Brassica rapa	HOM04D008718	ORTHO04D010073	8.5e-13	77.0	171	56.1
AT1G20440	Arabidopsis thaliana	HOM04D008718	ORTHO04D010073	5.5e-12	74.3	173	52.6
AL1G33380	Arabidopsis lyrata	HOM04D008718	ORTHO04D010073	9.4e-12	73.6	180	55.6
Tp1g18160	Schrenkiella parvula	HOM04D008718	ORTHO04D010073	1.6e-11	72.8	181	53.6
Carubv10010040m.g	Capsella rubella	HOM04D008718	ORTHO04D010073	3.0e-10	68.6	175	53.7
Bo7g061580	Brassica oleracea	HOM04D008718	ORTHO04D010073	1.1e-09	66.6	171	53.2
Carubv10010037m.g	Capsella rubella	HOM04D008718	ORTHO04D010073	5.7e-09	64.3	74	63.5
Araip.3269G	Arachis ipaensis	HOM04D014251	ORTHO04D015594	5.7e-09	64.3	122	44.3
Manes.05G140400	Manihot esculenta	HOM04D009388	ORTHO04D010073	1.7e-08	62.8	84	56.0
Bo5g030290	Brassica oleracea	HOM04D008718	ORTHO04D010073	3.7e-08	61.6	66	65.2
HBR1237G010	Hevea brasiliensis	HOM04D009388	ORTHO04D010073	1.4e-07	59.7	84	50.0
ZJU.LOC107419806	Ziziphus jujuba	HOM04D009388	ORTHO04D010073	6.9e-07	57.4	170	48.8
TPR.G32200	Trifolium pratense	HOM04D014251	ORTHO04D010073	1.5e-06	56.2	163	52.8

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment