Dicots PLAZA 4.5 : Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Achn332291	Actinidia chinensis	HOM04D000185	ORTHO04D024229	8.1e-34	146.0	107	100.0
Pbr025766.1.g	Pyrus bretschneideri	HOM04D000185	ORTHO04D001084	3.0e-12	74.3	34	94.1
MDO.mRNA.g.6226.4	Malus domestica	HOM04D001441	ORTHO04D002728	6.7e-12	73.2	80	78.8
Pbr001120.1.g	Pyrus bretschneideri	HOM04D000185	ORTHO04D001084	8.8e-12	72.8	33	93.9
Pbr001130.1.g	Pyrus bretschneideri	HOM04D000185	ORTHO04D001084	8.8e-12	72.8	33	93.9
Potri.009G090700	Populus trichocarpa	HOM04D000185	ORTHO04D001084	2.0e-11	71.6	33	93.9
Cpa.g.sc106.78	Carica papaya	HOM04D000185	ORTHO04D001084	3.3e-11	70.9	33	90.9
Migut.B00422	Erythranthe guttata	HOM04D000185	ORTHO04D001084	7.4e-11	69.7	33	87.9
Cc02_g19620	Coffea canephora	HOM04D000185	ORTHO04D001084	9.7e-11	69.3	33	87.9
Araip.NRD2A	Arachis ipaensis	HOM04D000185	ORTHO04D001084	1.7e-10	68.6	33	90.9
RCO.g.28152.000024	Ricinus communis	HOM04D000185	ORTHO04D001084	1.7e-10	68.6	33	87.9
Peaxi162Scf00016g02740	Petunia axillaris	HOM04D000185	ORTHO04D001084	1.7e-10	68.6	32	87.5
CAN.G606.43	Capsicum annuum	HOM04D000185	ORTHO04D001084	2.8e-10	67.8	31	90.3
Potri.001G296500	Populus trichocarpa	HOM04D000185	ORTHO04D001084	2.8e-10	67.8	33	87.9
Solyc01g107250.2	Solanum lycopersicum	HOM04D000185	ORTHO04D001084	2.8e-10	67.8	31	90.3
PGSC0003DMG400025848	Solanum tuberosum	HOM04D006434	ORTHO04D007818	2.8e-10	67.8	31	90.3
Prupe.8G140900	Prunus persica	HOM04D000185	ORTHO04D001084	2.8e-10	67.8	33	87.9
DCAR_021964	Daucus carota	HOM04D000185	ORTHO04D001084	4.8e-10	67.0	34	82.4
Manes.10G070200	Manihot esculenta	HOM04D000185	ORTHO04D001084	6.3e-10	66.6	33	84.8
HBR2907G004	Hevea brasiliensis	HOM04D000185	ORTHO04D001084	6.3e-10	66.6	33	84.8
Ciclev10029281m.g	Citrus clementina	HOM04D000185	ORTHO04D001084	8.2e-10	66.2	33	84.8
Ca_11913.g	Cicer arietinum	HOM04D000185	ORTHO04D001084	1.1e-09	65.9	33	87.9
Ca_05635.g	Cicer arietinum	HOM04D000185	ORTHO04D001084	1.4e-09	65.5	33	84.8
Eucgr.I01078	Eucalyptus grandis	HOM04D000185	ORTHO04D001084	4.1e-09	63.9	33	81.8
Medtr5g005170	Medicago truncatula	HOM04D000185	ORTHO04D001084	4.1e-09	63.9	34	82.4
ZJU.LOC107427138	Ziziphus jujuba	HOM04D000185	ORTHO04D024229	5.3e-09	63.5	34	76.5
ZJU.LOC107404458	Ziziphus jujuba	HOM04D000185	ORTHO04D001084	5.3e-09	63.5	34	76.5
GSVIVG01037864001	Vitis vinifera	HOM04D000185	ORTHO04D001084	5.3e-09	63.5	33	78.8
TPR.G27072	Trifolium pratense	HOM04D000185	ORTHO04D001084	5.3e-09	63.5	33	81.8
TPR.G8294	Trifolium pratense	HOM04D000185	ORTHO04D001084	5.3e-09	63.5	33	81.8
Medtr1g106785	Medicago truncatula	HOM04D000185	ORTHO04D001084	5.3e-09	63.5	33	81.8
THA.LOC104807225	Tarenaya hassleriana	HOM04D000185	ORTHO04D001084	9.1e-09	62.8	33	81.8
Glyma.11G001200	Glycine max	HOM04D000185	ORTHO04D001084	1.2e-08	62.4	33	81.8
FVE25524	Fragaria vesca	HOM04D000185	ORTHO04D001084	1.5e-08	62.0	33	78.8
Manes.07G063900	Manihot esculenta	HOM04D000185	ORTHO04D001084	1.5e-08	62.0	34	82.4
MELO3C018510	Cucumis melo	HOM04D000185	ORTHO04D001084	3.4e-08	60.8	33	75.8
Cucsa.219250	Cucumis sativus L.	HOM04D000185	ORTHO04D001084	5.9e-08	60.1	33	72.7
Glyma.10G258800	Glycine max	HOM04D000185	ORTHO04D001084	7.7e-08	59.7	32	81.2
Glyma.20G132400	Glycine max	HOM04D000185	ORTHO04D001084	7.7e-08	59.7	32	81.2
LOC_Os03g32580	Oryza sativa ssp. japonica	HOM04D000185	ORTHO04D001084	1.0e-07	59.3	34	76.5
Gorai.008G020900	Gossypium raimondii	HOM04D000185	ORTHO04D001084	1.3e-07	58.9	34	79.4
Vradi08g20110	Vigna radiata var. radiata	HOM04D000185	ORTHO04D001084	2.2e-07	58.2	32	81.2
NNU_13713	Nelumbo nucifera	HOM04D000185	ORTHO04D001084	2.9e-07	57.8	33	75.8
COL.COLO4_32542	Corchorus olitorius	HOM04D000185	ORTHO04D001084	6.5e-07	56.6	34	76.5
MDO.mRNA.g.1054.7	Malus domestica	HOM04D000185	ORTHO04D001084	1.1e-06	55.8	81	39.5
TCA.TCM_007197	Theobroma cacao	HOM04D002678	ORTHO04D003077	2.5e-06	54.7	34	73.5

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
Edit MSA alignment