PLAZA 3.0 Monocots gene overview : ZM04G10770

Gene: ZM04G10770 (Zea mays)

Overview

Gene Identifier: ZM04G10770
Transcript Identifier: ZM04G10770.1
Gene Type: Coding gene
Location: 4 : 54095611-54102589 : positive

Family

Gene family: HOM03M000030
(1059 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): cycle protein 48 homolog AF_1297

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
name	GRMZM2G070305
pid	GRMZM2G070305_P01

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006625	IEA	InterPro	protein targeting to peroxisome
GO:0007031	IEA	InterPro	peroxisome organization

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0017111	IEA	InterPro	nucleoside-triphosphatase activity
GO:0000166	IEA	InterPro	nucleotide binding
GO:0042623	IEA	InterPro	ATPase activity, coupled
GO:0005524	IEA	InterPro	ATP binding
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03M000030
GO:0016817	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides	HOM03M000030
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03M000030
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03M000030
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03M000030
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03M000030
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03M000030
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03M000030
GO:0016818	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	HOM03M000030
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03M000030
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M000030
GO:0016462	IEA	PLAZA Homology	pyrophosphatase activity	HOM03M000030
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03M000030
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03M000030
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03M000030
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03M000030
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03M000030
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03M000030
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03M000030
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03M000030
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03M000030
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03M000030

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005778	IEA	InterPro	peroxisomal membrane
GO:0005777	IEA	InterPro	peroxisome

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR003959	ATPase, AAA-type, core
IPR003593	AAA+ ATPase domain
IPR003960	ATPase, AAA-type, conserved site
IPR015342	Peroxisome biogenesis factor 1, N-terminal
IPR025653	Peroxisome biogenesis factor 1

Mapman id	Description
29.5.7	protein.degradation.metalloprotease
29.5.9	protein.degradation.AAA type
29.5.11.20	protein.degradation.ubiquitin.proteasom

No SignalP domains detected for this gene.