PLAZA 3.0 Monocots gene overview : VV11G03280

Gene: VV11G03280 (Vitis vinifera)

Overview

Gene Identifier: VV11G03280
Transcript Identifier: VV11G03280.1
Gene Type: Coding gene
Location: chr11 : 1519660-1525957 : negative

Family

Gene family: HOM03M001877
(43 genes in 16 species)
specific family
Subfamily: ORTHO03M009192
(5 genes in 5 species)
specific family

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Descriptions

Description (AnnoMine): Lycopene epsilon cyclase, chloroplastic

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	GSVIVG01015169001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0016117	IEA	InterPro	carotenoid biosynthetic process
GO:0009765	ISO	PLAZA Integrative Orthology	photosynthesis, light harvesting	AT5G57030
GO:0016123	ISO	PLAZA Integrative Orthology	xanthophyll biosynthetic process	AT5G57030
GO:0016120	ISO	PLAZA Integrative Orthology	carotene biosynthetic process	AT5G57030
GO:0016109	IEA	PLAZA Homology	tetraterpenoid biosynthetic process	HOM03M001877

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016705	IEA	InterPro	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0045435	ISO	PLAZA Integrative Orthology	lycopene epsilon cyclase activity	AT5G57030

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT5G57030

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR010108	Lycopene cyclase, beta/epsilon
IPR008671	Lycopene cyclase-type, FAD-binding

Mapman id	Description
16.1.4.4	secondary metabolism.isoprenoids.carotenoids.lycopene epsilon cyclase

No SignalP domains detected for this gene.