Gene: VV05G11540 (Vitis vinifera)

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Gene Identifier
VV05G11540
Transcript Identifier
VV05G11540.1
Gene Type
Coding gene
Location
chr5 : 711344-718860 : negative

Family

Gene family
HOM03M001131
(64 genes in 14 species)
specific family

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Descriptions

Description (AnnoMine)
Phytochrome A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidGSVIVG01034989001

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009584IEAInterProdetection of visible light
GO:0018298IEAInterProprotein-chromophore linkage
GO:0007165IEAInterProsignal transduction
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0010017ISOPLAZA Integrative Orthologyred or far-red light signaling pathwayAT4G16250
GO:0010202ISOPLAZA Integrative Orthologyresponse to low fluence red light stimulusAT2G18790
GO:0010218ISOPLAZA Integrative Orthologyresponse to far red lightAT2G18790
GO:0009640ISOPLAZA Integrative OrthologyphotomorphogenesisAT2G18790
GO:0006325ISOPLAZA Integrative Orthologychromatin organizationAT2G18790
GO:0015979ISOPLAZA Integrative OrthologyphotosynthesisAT2G18790
GO:0010374ISOPLAZA Integrative Orthologystomatal complex developmentAT2G18790
GO:0010148ISOPLAZA Integrative OrthologytranspirationAT2G18790
GO:0031347ISOPLAZA Integrative Orthologyregulation of defense responseAT2G18790
GO:0009867ISOPLAZA Integrative Orthologyjasmonic acid mediated signaling pathwayAT2G18790
GO:0010617ISOPLAZA Integrative Orthologycircadian regulation of calcium ion oscillationAT2G18790
GO:0010161ISOPLAZA Integrative Orthologyred light signaling pathwayAT2G18790
GO:0010029ISOPLAZA Integrative Orthologyregulation of seed germinationAT2G18790
GO:0009687ISOPLAZA Integrative Orthologyabscisic acid metabolic processAT2G18790
GO:0009630ISOPLAZA Integrative OrthologygravitropismAT2G18790
GO:0009638ISOPLAZA Integrative OrthologyphototropismAT2G18790
GO:0009649ISOPLAZA Integrative Orthologyentrainment of circadian clockAT2G18790
GO:0009409ISOPLAZA Integrative Orthologyresponse to coldAT2G18790
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M001131

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0004871IEAInterProsignal transducer activity
GO:0000155IEAInterProphosphorelay sensor kinase activity
GO:0005524IEAInterProATP binding
GO:0009883ISOPLAZA Integrative Orthologyred or far-red light photoreceptor activityAT4G16250 AT2G18790
GO:0042802ISOPLAZA Integrative Orthologyidentical protein bindingAT4G16250 AT2G18790
GO:0031517ISOPLAZA Integrative Orthologyred light photoreceptor activityAT2G18790
GO:0031516ISOPLAZA Integrative Orthologyfar-red light photoreceptor activityAT2G18790
GO:0009881IEAPLAZA Homologyphotoreceptor activityHOM03M001131

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016020IEAInterPromembrane
GO:0005634ISOPLAZA Integrative OrthologynucleusAT4G16250 AT2G18790
GO:0016604ISOPLAZA Integrative Orthologynuclear bodyAT2G18790
GO:0005829ISOPLAZA Integrative OrthologycytosolAT2G18790

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000014PAS domain
IPR003661Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain
IPR003018GAF domain
IPR013767PAS fold
IPR003594Histidine kinase-like ATPase, ATP-binding domain
IPR005467Signal transduction histidine kinase, core
IPR001294Phytochrome
IPR016132Phytochrome chromophore attachment domain
IPR009082Signal transduction histidine kinase, homodimeric domain
IPR013515Phytochrome, central region
IPR013654PAS fold-2
IPR013516Phytochrome chromophore binding site

Mapman id Description
30.11signalling.light
No SignalP domains detected for this gene.