PLAZA 3.0 Monocots gene overview : VV04G08810

Gene: VV04G08810 (Vitis vinifera)

Overview

Gene Identifier: VV04G08810
Transcript Identifier: VV04G08810.1
Gene Type: Coding gene
Location: chr4 : 1376600-1381754 : negative

Family

Gene family: HOM03M005557
(18 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): Peroxisome biogenesis factor 10

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	GSVIVG01035453001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007031	IEA	InterPro	peroxisome organization
GO:0016558	IEA	InterPro	protein import into peroxisome matrix
GO:0009793	ISO	PLAZA Integrative Orthology	embryo development ending in seed dormancy	AT2G26350
GO:0009853	ISO	PLAZA Integrative Orthology	photorespiration	AT2G26350
GO:0010381	ISO	PLAZA Integrative Orthology	attachment of peroxisome to chloroplast	AT2G26350
GO:0006635	ISO	PLAZA Integrative Orthology	fatty acid beta-oxidation	AT2G26350
GO:0006513	ISO	PLAZA Integrative Orthology	protein monoubiquitination	AT2G26350

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0004842	ISO	PLAZA Integrative Orthology	ubiquitin-protein ligase activity	AT2G26350

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005779	IEA	InterPro	integral to peroxisomal membrane
GO:0005777	ISO	PLAZA Integrative Orthology	peroxisome	AT2G26350
GO:0005783	ISO	PLAZA Integrative Orthology	endoplasmic reticulum	AT2G26350
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT2G26350
GO:0031231	IEA	PLAZA Homology	intrinsic to peroxisomal membrane	HOM03M005557
GO:0005778	IEA	PLAZA Homology	peroxisomal membrane	HOM03M005557
GO:0031903	IEA	PLAZA Homology	microbody membrane	HOM03M005557

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR006845	Pex, N-terminal
IPR025654	Peroxisome biogenesis factor 10
IPR017907	Zinc finger, RING-type, conserved site
IPR001841	Zinc finger, RING-type
IPR013083	Zinc finger, RING/FYVE/PHD-type

Mapman id	Description
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING

No SignalP domains detected for this gene.