PLAZA 3.0 Monocots gene overview : VV00G08350

Gene: VV00G08350 (Vitis vinifera)

Overview

Gene Identifier: VV00G08350
Transcript Identifier: VV00G08350.1
Gene Type: Coding gene
Location: chrUn : 14127259-14135274 : positive

Family

Gene family: HOM03M003499
(25 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): HIV Tat-specific factor 1 homolog

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	GSVIVG01003992001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009910	ISO	PLAZA Integrative Orthology	negative regulation of flower development	AT5G16260
GO:0000184	ISO	PLAZA Integrative Orthology	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	AT5G16260

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000166	IEA	InterPro	nucleotide binding
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0003729	ISO	PLAZA Integrative Orthology	mRNA binding	AT5G16260
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M003499
GO:0005515	IEA	PLAZA Homology	protein binding	HOM03M003499

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT5G16260
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT5G16260

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding, alpha-beta plait

Mapman id	Description
27.4	RNA.RNA binding

No SignalP domains detected for this gene.