Gene: VV00G07820 (Vitis vinifera)

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Gene Identifier
VV00G07820
Transcript Identifier
VV00G07820.1
Gene Type
Coding gene
Location
chrUn : 12953503-12959650 : negative

Family

Gene family
HOM03M000666
(103 genes in 16 species)
specific family
Subfamily
ORTHO03M000572
(13 genes in 11 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description (AnnoMine)
Serine hydroxymethyltransferase
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidGSVIVG01003859001

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006544IEAInterProglycine metabolic process
GO:0006563IEAInterProL-serine metabolic process
GO:0009409ISOPLAZA Integrative Orthologyresponse to coldAT4G37930
GO:0046686ISOPLAZA Integrative Orthologyresponse to cadmium ionAT4G37930
GO:0009853ISOPLAZA Integrative OrthologyphotorespirationAT4G37930
GO:0009626ISOPLAZA Integrative Orthologyplant-type hypersensitive responseAT4G37930
GO:0009416ISOPLAZA Integrative Orthologyresponse to light stimulusAT4G37930
GO:0007623ISOPLAZA Integrative Orthologycircadian rhythmAT4G37930
GO:0019464ISOPLAZA Integrative Orthologyglycine decarboxylation via glycine cleavage systemAT4G37930

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0030170IEAInterPropyridoxal phosphate binding
GO:0003824IEAInterProcatalytic activity
GO:0004372IEAInterProglycine hydroxymethyltransferase activity
GO:0050897ISOPLAZA Integrative Orthologycobalt ion bindingAT5G26780
GO:0008270ISOPLAZA Integrative Orthologyzinc ion bindingAT5G26780
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT4G37930
GO:0008266ISOPLAZA Integrative Orthologypoly(U) RNA bindingAT4G37930
GO:0016742IEAPLAZA Homologyhydroxymethyl-, formyl- and related transferase activityHOM03M000666

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005829ISOPLAZA Integrative OrthologycytosolAT5G26780 AT4G37930
GO:0005747ISOPLAZA Integrative Orthologymitochondrial respiratory chain complex IAT5G26780
GO:0005739ISOPLAZA Integrative OrthologymitochondrionAT5G26780 AT4G37930
GO:0009536ISOPLAZA Integrative OrthologyplastidAT4G32520
GO:0009570ISOPLAZA Integrative Orthologychloroplast stromaAT4G32520 AT4G37930
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT4G32520 AT4G37930
GO:0009534ISOPLAZA Integrative Orthologychloroplast thylakoidAT4G37930
GO:0048046ISOPLAZA Integrative OrthologyapoplastAT4G37930
GO:0016020ISOPLAZA Integrative OrthologymembraneAT4G37930
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT4G37930
GO:0010319ISOPLAZA Integrative OrthologystromuleAT4G37930
GO:0022626ISOPLAZA Integrative Orthologycytosolic ribosomeAT4G37930
GO:0005634ISOPLAZA Integrative OrthologynucleusAT4G37930

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
IPR001085Serine hydroxymethyltransferase
IPR019798Serine hydroxymethyltransferase, pyridoxal phosphate binding site
IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
IPR015424Pyridoxal phosphate-dependent transferase

Mapman id Description
1.2.5PS.photorespiration.serine hydroxymethyltransferase
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBMADS