PLAZA 3.0 Monocots gene overview : VV00G00040

Gene: VV00G00040 (Vitis vinifera)

Overview

Gene Identifier: VV00G00040
Transcript Identifier: VV00G00040.1
Gene Type: Coding gene
Location: chr12_random : 94747-101494 : negative

Family

Gene family: HOM03M000574
(116 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): rich splicing factor 2

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	GSVIVG01038734001

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0000398	ISO	PLAZA Integrative Orthology	mRNA splicing, via spliceosome	AT5G64200

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0000166	IEA	InterPro	nucleotide binding
GO:0003676	IEA	InterPro	nucleic acid binding
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03M000574

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016607	ISO	PLAZA Integrative Orthology	nuclear speck	AT5G64200
GO:0016020	ISO	PLAZA Integrative Orthology	membrane	AT5G64200
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT5G64200

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000504	RNA recognition motif domain
IPR003954	RNA recognition motif domain, eukaryote
IPR012677	Nucleotide-binding, alpha-beta plait

Mapman id	Description
27.4	RNA.RNA binding

No SignalP domains detected for this gene.