Gene: SL12G006450 (Solanum lycopersicum)

Overview top

Gene Identifier
SL12G006450
Transcript Identifier
SL12G006450.1
Gene Type
Coding gene
Location
ch12 : 921921-927162 : negative

Family

Gene family
HOM03M001970
(41 genes in 14 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

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Descriptions

Description
Aminotransferase-like protein (AHRD V1 ***- Q9LIE2_ARATH)%3B contains Interpro domain(s) IPR005814 Aminotransferase class-III
Description
Gamma aminobutyrate transaminase 3, chloroplastic
Description (AnnoMine)
Probable gamma-aminobutyrate transaminase 3, mitochondrial

Identifiers

Identifier Name
pidSolyc12g006450.1.1
uniprotQ84P52

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0008152IEAUniProtmetabolic process1 2
GO:0006979ISOPLAZA Integrative Orthologyresponse to oxidative stressAT3G22200
GO:0006540ISOPLAZA Integrative Orthologyglutamate decarboxylation to succinateAT3G22200
GO:0009450ISOPLAZA Integrative Orthologygamma-aminobutyric acid catabolic processAT3G22200
GO:0009860ISOPLAZA Integrative Orthologypollen tube growthAT3G22200
GO:0010183ISOPLAZA Integrative Orthologypollen tube guidanceAT3G22200
GO:0019484ISOPLAZA Integrative Orthologybeta-alanine catabolic processAT3G22200
GO:0046686ISOPLAZA Integrative Orthologyresponse to cadmium ionAT3G22200
GO:0010033ISOPLAZA Integrative Orthologyresponse to organic substanceAT3G22200
GO:0010154ISOPLAZA Integrative Orthologyfruit developmentAT3G22200
GO:0048367ISOPLAZA Integrative Orthologyshoot system developmentAT3G22200
GO:0005985ISOPLAZA Integrative Orthologysucrose metabolic processAT3G22200
GO:0006020ISOPLAZA Integrative Orthologyinositol metabolic processAT3G22200
GO:0006105ISOPLAZA Integrative Orthologysuccinate metabolic processAT3G22200
GO:0006536ISOPLAZA Integrative Orthologyglutamate metabolic processAT3G22200
GO:0006541ISOPLAZA Integrative Orthologyglutamine metabolic processAT3G22200
GO:0009448ISOPLAZA Integrative Orthologygamma-aminobutyric acid metabolic processAT3G22200
GO:0009651ISOPLAZA Integrative Orthologyresponse to salt stressAT3G22200
GO:0048364ISOPLAZA Integrative Orthologyroot developmentAT3G22200
GO:0009865ISOPLAZA Integrative Orthologypollen tube adhesionAT3G22200

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0030170IEAUniProtpyridoxal phosphate binding1 2
GO:0008483IEAUniProttransaminase activity1 2
GO:0003824IEAInterProcatalytic activity
GO:0034387ISOPLAZA Integrative Orthology4-aminobutyrate:pyruvate transaminase activityAT3G22200
GO:0008270ISOPLAZA Integrative Orthologyzinc ion bindingAT3G22200
GO:0050897ISOPLAZA Integrative Orthologycobalt ion bindingAT3G22200

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507IEAUniProtchloroplast1 2
GO:0005739ISOPLAZA Integrative OrthologymitochondrionAT3G22200
GO:0005774ISOPLAZA Integrative Orthologyvacuolar membraneAT3G22200
GO:0005794ISOPLAZA Integrative OrthologyGolgi apparatusAT3G22200

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005814Aminotransferase class-III
IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
IPR015424Pyridoxal phosphate-dependent transferase
IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1

Mapman id Description
19.3tetrapyrrole synthesis.GSA
No SignalP domains detected for this gene.