Gene: SL10G080210 (Solanum lycopersicum)

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Gene Identifier
SL10G080210
Transcript Identifier
SL10G080210.1
Gene Type
Coding gene
Location
ch10 : 60883700-60890335 : negative

Family

Gene family
HOM03M000089
(508 genes in 14 species)
specific family
Subfamily
ORTHO03M000708
(12 genes in 8 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH)%3B contains Interpro domain(s) IPR000743 Glycoside hydrolase%2C family 28
Description
Polygalacturonase-2
Description (AnnoMine)
Polygalacturonase 2

Identifiers

Identifier Name
pidSolyc10g080210.1.1
uniprotP05117

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975IEAUniProtcarbohydrate metabolic process1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0009835IEAUniProtfruit ripening1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0045490ISOPLAZA Integrative Orthologypectin catabolic processAT3G07970
GO:0048235ISOPLAZA Integrative Orthologypollen sperm cell differentiationAT3G07970
GO:0010047ISOPLAZA Integrative Orthologyfruit dehiscenceAT3G07970
GO:0009901ISOPLAZA Integrative Orthologyanther dehiscenceAT3G07970
GO:0009830ISOPLAZA Integrative Orthologycell wall modification involved in abscissionAT3G07970
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03M000089

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004650IEAUniProtpolygalacturonase activity1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03M000089
GO:0016798IEAPLAZA Homologyhydrolase activity, acting on glycosyl bondsHOM03M000089
GO:0004553IEAPLAZA Homologyhydrolase activity, hydrolyzing O-glycosyl compoundsHOM03M000089

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0048046IEAUniProtapoplast1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0005618IEAUniProtcell wall1 2 3 4 5 6 7 8 9 10 11 12 13 14 15

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006626Parallel beta-helix repeat
IPR011050Pectin lyase fold/virulence factor
IPR000743Glycoside hydrolase, family 28
IPR012334Pectin lyase fold

Mapman id Description
10.6.3cell wall.degradation.pectate lyases and polygalacturonases
SignalP Description
SignalP-noTMSignal Peptide detected using noTM network