PLAZA 3.0 Monocots gene overview : SL10G080210

Gene: SL10G080210 (Solanum lycopersicum)

Overview

Gene Identifier: SL10G080210
Transcript Identifier: SL10G080210.1
Gene Type: Coding gene
Location: ch10 : 60883700-60890335 : negative

Family

Gene family: HOM03M000089
(508 genes in 14 species)
specific family
Subfamily: ORTHO03M000708
(12 genes in 8 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH)%3B contains Interpro domain(s) IPR000743 Glycoside hydrolase%2C family 28

Description: Polygalacturonase-2

Description (AnnoMine): Polygalacturonase 2

Identifiers

Identifier	Name
pid	Solyc10g080210.1.1
uniprot	P05117

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0005975	IEA	UniProt	carbohydrate metabolic process	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0009835	IEA	UniProt	fruit ripening	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0045490	ISO	PLAZA Integrative Orthology	pectin catabolic process	AT3G07970
GO:0048235	ISO	PLAZA Integrative Orthology	pollen sperm cell differentiation	AT3G07970
GO:0010047	ISO	PLAZA Integrative Orthology	fruit dehiscence	AT3G07970
GO:0009901	ISO	PLAZA Integrative Orthology	anther dehiscence	AT3G07970
GO:0009830	ISO	PLAZA Integrative Orthology	cell wall modification involved in abscission	AT3G07970
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03M000089

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004650	IEA	UniProt	polygalacturonase activity	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03M000089
GO:0016798	IEA	PLAZA Homology	hydrolase activity, acting on glycosyl bonds	HOM03M000089
GO:0004553	IEA	PLAZA Homology	hydrolase activity, hydrolyzing O-glycosyl compounds	HOM03M000089

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0048046	IEA	UniProt	apoplast	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0005618	IEA	UniProt	cell wall	1 2 3 4 5 6 7 8 9 10 11 12 13 14 15

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR006626	Parallel beta-helix repeat
IPR011050	Pectin lyase fold/virulence factor
IPR000743	Glycoside hydrolase, family 28
IPR012334	Pectin lyase fold

Mapman id	Description
10.6.3	cell wall.degradation.pectate lyases and polygalacturonases

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network