Gene: SL07G056290 (Solanum lycopersicum)

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Gene Identifier
SL07G056290
Transcript Identifier
SL07G056290.1
Gene Type
Coding gene
Location
ch07 : 61470406-61473987 : positive

Family

Gene family
HOM03M000089
(508 genes in 14 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Polygalacturonase (AHRD V1 ***- Q2M4X6_LILLO)%3B contains Interpro domain(s) IPR000743 Glycoside hydrolase%2C family 28
Description (AnnoMine)
Exopolygalacturonase clone GBGE184

Identifiers

Identifier Name
pidSolyc07g056290.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975IEAInterProcarbohydrate metabolic process
GO:0009793ISOPLAZA Integrative Orthologyembryo development ending in seed dormancyAT2G33160
GO:0010098ISOPLAZA Integrative Orthologysuspensor developmentAT2G33160
GO:0080159ISOPLAZA Integrative Orthologyzygote elongationAT2G33160
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03M000089

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004650IEAInterPropolygalacturonase activity
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03M000089
GO:0016798IEAPLAZA Homologyhydrolase activity, acting on glycosyl bondsHOM03M000089
GO:0004553IEAPLAZA Homologyhydrolase activity, hydrolyzing O-glycosyl compoundsHOM03M000089

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005618ISOPLAZA Integrative Orthologycell wallAT2G33160

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012334Pectin lyase fold
IPR000743Glycoside hydrolase, family 28
IPR006626Parallel beta-helix repeat
IPR011050Pectin lyase fold/virulence factor

Mapman id Description
10.6.3cell wall.degradation.pectate lyases and polygalacturonases
No SignalP domains detected for this gene.