Gene: SL06G084090 (Solanum lycopersicum)

Overview top

Gene Identifier
SL06G084090
Transcript Identifier
SL06G084090.1
Gene Type
Coding gene
Location
ch06 : 45626067-45628789 : positive

Family

Gene family
HOM03M000165
(290 genes in 16 species)
specific family
Subfamily
ORTHO03M006430
(6 genes in 6 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Histone H2A (AHRD V1 *-*- C5XX54_SORBI)%3B contains Interpro domain(s) IPR002119 Histone H2A
Description (AnnoMine)
H2A.z

Identifiers

Identifier Name
pidSolyc06g084090.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006334IEAInterPronucleosome assembly
GO:0044030ISOPLAZA Integrative Orthologyregulation of DNA methylationAT3G54560 AT2G38810
GO:0010468ISOPLAZA Integrative Orthologyregulation of gene expressionAT3G54560 AT2G38810
GO:0016048ISOPLAZA Integrative Orthologydetection of temperature stimulusAT3G54560
GO:0042742ISOPLAZA Integrative Orthologydefense response to bacteriumAT3G54560
GO:0009908ISOPLAZA Integrative Orthologyflower developmentAT3G54560
GO:0009909ISOPLAZA Integrative Orthologyregulation of flower developmentAT2G38810
GO:0071824IEAPLAZA Homologyprotein-DNA complex subunit organizationHOM03M000165
GO:0071822IEAPLAZA Homologyprotein complex subunit organizationHOM03M000165
GO:0006325IEAPLAZA Homologychromatin organizationHOM03M000165
GO:0070271IEAPLAZA Homologyprotein complex biogenesisHOM03M000165
GO:0006323IEAPLAZA HomologyDNA packagingHOM03M000165
GO:0043933IEAPLAZA Homologymacromolecular complex subunit organizationHOM03M000165
GO:0031497IEAPLAZA Homologychromatin assemblyHOM03M000165
GO:0006996IEAPLAZA Homologyorganelle organizationHOM03M000165
GO:0071103IEAPLAZA HomologyDNA conformation changeHOM03M000165
GO:0065003IEAPLAZA Homologymacromolecular complex assemblyHOM03M000165
GO:0065004IEAPLAZA Homologyprotein-DNA complex assemblyHOM03M000165
GO:0006333IEAPLAZA Homologychromatin assembly or disassemblyHOM03M000165
GO:0016043IEAPLAZA Homologycellular component organizationHOM03M000165
GO:0051276IEAPLAZA Homologychromosome organizationHOM03M000165
GO:0044085IEAPLAZA Homologycellular component biogenesisHOM03M000165
GO:0022607IEAPLAZA Homologycellular component assemblyHOM03M000165
GO:0034728IEAPLAZA Homologynucleosome organizationHOM03M000165
GO:0071840IEAPLAZA Homologycellular component organization or biogenesisHOM03M000165
GO:0034622IEAPLAZA Homologycellular macromolecular complex assemblyHOM03M000165
GO:0006259IEAPLAZA HomologyDNA metabolic processHOM03M000165
GO:0006461IEAPLAZA Homologyprotein complex assemblyHOM03M000165

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0046982IEAInterProprotein heterodimerization activity
GO:0003677IEAInterProDNA binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT3G54560
GO:0046983IEAPLAZA Homologyprotein dimerization activityHOM03M000165

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEAInterPronucleus
GO:0000786IEAInterPronucleosome
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT2G38810
GO:1990104IEAPLAZA HomologyDNA bending complexHOM03M000165
GO:0032993IEAPLAZA Homologyprotein-DNA complexHOM03M000165
GO:0043228IEAPLAZA Homologynon-membrane-bounded organelleHOM03M000165
GO:0032991IEAPLAZA Homologymacromolecular complexHOM03M000165
GO:0000785IEAPLAZA HomologychromatinHOM03M000165
GO:0044815IEAPLAZA HomologyDNA packaging complexHOM03M000165
GO:0005694IEAPLAZA HomologychromosomeHOM03M000165
GO:0043234IEAPLAZA Homologyprotein complexHOM03M000165
GO:0043232IEAPLAZA Homologyintracellular non-membrane-bounded organelleHOM03M000165
GO:0044427IEAPLAZA Homologychromosomal partHOM03M000165
GO:0044422IEAPLAZA Homologyorganelle partHOM03M000165
GO:0044446IEAPLAZA Homologyintracellular organelle partHOM03M000165

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007125Histone core
IPR009072Histone-fold
IPR002119Histone H2A

Mapman id Description
28.1.3DNA.synthesis/chromatin structure.histone
No SignalP domains detected for this gene.