Gene: SL05G009980 (Solanum lycopersicum)

Overview top

Gene Identifier
SL05G009980
Transcript Identifier
SL05G009980.1
Gene Type
Coding gene
Location
ch05 : 4176495-4183120 : negative

Family

Gene family
HOM03M001869
(43 genes in 16 species)
specific family
Subfamily
ORTHO03M002145
(9 genes in 8 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Protein LSM14 homolog B (AHRD V1 *--- LS14B_MOUSE)%3B contains Interpro domain(s) IPR019053 FFD and TFG box motifs
Description (AnnoMine)
Protein decapping 5

Identifiers

Identifier Name
pidSolyc05g009980.2.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0033962IEAPLAZA Homologycytoplasmic mRNA processing body assemblyHOM03M001869
GO:0031087IEAPLAZA Homologydeadenylation-independent decapping of nuclear-transcribed mRNAHOM03M001869
GO:0031086IEAPLAZA Homologynuclear-transcribed mRNA catabolic process, deadenylation-independent decayHOM03M001869
GO:0017148IEAPLAZA Homologynegative regulation of translationHOM03M001869
GO:0010606IEAPLAZA Homologypositive regulation of cytoplasmic mRNA processing body assemblyHOM03M001869
GO:0010603IEAPLAZA Homologyregulation of cytoplasmic mRNA processing body assemblyHOM03M001869

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0042803IEAPLAZA Homologyprotein homodimerization activityHOM03M001869

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000932IEAPLAZA Homologycytoplasmic mRNA processing bodyHOM03M001869

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR019050FDF domain
IPR025609Lsm14 N-terminal
IPR025768TFG box
IPR025761FFD box
IPR025762DFDF domain
IPR010920Like-Sm (LSM) domain

Mapman id Description
35.2not assigned.unknown
No SignalP domains detected for this gene.