PLAZA 3.0 Monocots gene overview : SL05G007940

Gene: SL05G007940 (Solanum lycopersicum)

Overview

Gene Identifier: SL05G007940
Transcript Identifier: SL05G007940.1
Gene Type: Coding gene
Location: ch05 : 2366532-2369303 : negative

Family

Gene family: HOM03M000737
(95 genes in 16 species)
specific family
Duplication type: Tandem duplicate and Block duplicate

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Descriptions

Description: Ribonuclease T2 (AHRD V1 ***- Q9ZQX1_CICAR)%3B contains Interpro domain(s) IPR001568 Ribonuclease T2

Description: Intracellular ribonuclease LX

Description (AnnoMine): Intracellular ribonuclease LX

Identifiers

Identifier	Name
pid	Solyc05g007940.2.1
uniprot	P80196

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0060866	IDA	Gene Ontology	leaf abscission	1
GO:0010150	IDA	Gene Ontology	leaf senescence	1
GO:0090305	IEA	UniProt	nucleic acid phosphodiester bond hydrolysis	1 2
GO:0006950	IEA	UniProt	response to stress	1 2

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0033897	IEA	UniProt	ribonuclease T2 activity	1 2
GO:0003723	IEA	UniProt	RNA binding	1 2
GO:0016894	IEA	PLAZA Homology	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters	HOM03M000737
GO:0016892	IEA	PLAZA Homology	endoribonuclease activity, producing 3'-phosphomonoesters	HOM03M000737

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005737	IEA	UniProt	cytoplasm	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001568	Ribonuclease T2-like
IPR018188	Ribonuclease T2, active site

Mapman id	Description
27.1.19	RNA.processing.ribonucleases

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network