Gene: SL04G028580 (Solanum lycopersicum)

Overview top

Gene Identifier
SL04G028580
Transcript Identifier
SL04G028580.1
Gene Type
Coding gene
Location
ch04 : 28635070-28636110 : negative

Family

Gene family
HOM03M000279
(195 genes in 16 species)
specific family
Subfamily
ORTHO03M016259
(3 genes in 3 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description
Lysine-specific demethylase 5A (AHRD V1 *--- KDM5A_MOUSE)%3B contains Interpro domain(s) IPR013129 Transcription factor jumonji
Description (AnnoMine)
Probable lysine-specific demethylase ELF6

Identifiers

Identifier Name
pidSolyc04g028580.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0033169ISOPLAZA Integrative Orthologyhistone H3-K9 demethylationAT5G04240
GO:0009826ISOPLAZA Integrative Orthologyunidimensional cell growthAT5G04240
GO:0009741ISOPLAZA Integrative Orthologyresponse to brassinosteroidAT5G04240
GO:0048579ISOPLAZA Integrative Orthologynegative regulation of long-day photoperiodism, floweringAT5G04240
GO:0048577ISOPLAZA Integrative Orthologynegative regulation of short-day photoperiodism, floweringAT5G04240
GO:0006355ISOPLAZA Integrative Orthologyregulation of transcription, DNA-dependentAT5G04240

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT5G04240

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003347JmjC domain
IPR003349Transcription factor jumonji, JmjN

Mapman id Description
27.3.57RNA.regulation of transcription.JUMONJI family
No SignalP domains detected for this gene.