Gene: SL04G015530 (Solanum lycopersicum)

Overview top

Gene Identifier
SL04G015530
Transcript Identifier
SL04G015530.1
Gene Type
Coding gene
Location
ch04 : 5756603-5764191 : positive

Family

Gene family
HOM03M000089
(508 genes in 14 species)
specific family
Subfamily
ORTHO03M000708
(12 genes in 8 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Polygalacturonase A (AHRD V1 **** Q9M6S2_ACTCH)%3B contains Interpro domain(s) IPR000408 Regulator of chromosome condensation%2C RCC1 IPR000743 Glycoside hydrolase%2C family 28
Description (AnnoMine)
Probable polygalacturonase At1g80170

Identifiers

Identifier Name
pidSolyc04g015530.1.1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0005975IEAInterProcarbohydrate metabolic process
GO:0010047ISOPLAZA Integrative Orthologyfruit dehiscenceAT3G57510 AT2G41850
GO:0009901ISOPLAZA Integrative Orthologyanther dehiscenceAT3G57510 AT2G41850
GO:0009830ISOPLAZA Integrative Orthologycell wall modification involved in abscissionAT3G57510 AT2G41850
GO:0010227ISOPLAZA Integrative Orthologyfloral organ abscissionAT2G41850
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03M000089

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004650IEAInterPropolygalacturonase activity
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03M000089
GO:0016798IEAPLAZA Homologyhydrolase activity, acting on glycosyl bondsHOM03M000089
GO:0004553IEAPLAZA Homologyhydrolase activity, hydrolyzing O-glycosyl compoundsHOM03M000089

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012334Pectin lyase fold
IPR000743Glycoside hydrolase, family 28
IPR006626Parallel beta-helix repeat
IPR011050Pectin lyase fold/virulence factor

Mapman id Description
10.6.3cell wall.degradation.pectate lyases and polygalacturonases
No SignalP domains detected for this gene.