Gene: SL02G078260 (Solanum lycopersicum)

Overview top

Gene Identifier
SL02G078260
Transcript Identifier
SL02G078260.1
Gene Type
Coding gene
Location
ch02 : 37583697-37590672 : positive

Family

Gene family
HOM03M000547
(120 genes in 16 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
DNA-directed RNA polymerase (AHRD V1 ***- Q1L5Y9_PETHY)%3B contains Interpro domain(s) IPR007121 RNA polymerase%2C beta subunit%2C conserved site IPR007120 DNA-directed RNA polymerase%2C subunit 2%2C domain 6 IPR015712 DNA-directed RNA polymerase%2C subunit 2
Description
DNA-directed RNA polymerase II subunit RPB2
Description (AnnoMine)
polymerase II subunit RPB2

Identifiers

Identifier Name
pidSolyc02g078260.2.1
uniprotQ42877

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009793IEAUniProtembryo development ending in seed dormancy1
GO:0000956IEAUniProtnuclear-transcribed mRNA catabolic process1
GO:0000394IEAUniProtRNA splicing, via endonucleolytic cleavage and ligation1
GO:0006366IEAUniProttranscription from RNA polymerase II promoter1
GO:0006351IEAInterProtranscription, DNA-templated

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAUniProtDNA binding1
GO:0003899IEAUniProtDNA-directed RNA polymerase activity1
GO:0046872IEAUniProtmetal ion binding1
GO:0032549IEAUniProtribonucleoside binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005829IEAUniProtcytosol1
GO:0005665IEAUniProtDNA-directed RNA polymerase II, core complex1
GO:0009506IEAUniProtplasmodesma1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007121RNA polymerase, beta subunit, conserved site
IPR007644RNA polymerase, beta subunit, protrusion
IPR007646RNA polymerase Rpb2, domain 4
IPR007647RNA polymerase Rpb2, domain 5
IPR007120DNA-directed RNA polymerase, subunit 2, domain 6
IPR007645RNA polymerase Rpb2, domain 3
IPR014724RNA polymerase Rpb2, OB-fold
IPR015712DNA-directed RNA polymerase, subunit 2
IPR007642RNA polymerase Rpb2, domain 2
IPR007641RNA polymerase Rpb2, domain 7

Mapman id Description
27.2RNA.transcription
No SignalP domains detected for this gene.