PLAZA 3.0 Monocots gene overview : SI009G27780

Gene: SI009G27780 (Setaria italica)

Overview

Gene Identifier: SI009G27780
Transcript Identifier: SI009G27780.1
Gene Type: Coding gene
Location: scaffold_9 : 23144432-23149743 : positive

Family

Gene family: HOM03M004522
(21 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): Peroxisome biogenesis protein 2

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Si037411m
tid	Si037411m
id	PAC:19685042
GeneName	Si037411m.g

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0007031	IEA	Genome Project	peroxisome organization

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0008270	IEA	InterPro	zinc ion binding
GO:0046872	IEA	InterPro	metal ion binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005778	IEA	Genome Project	peroxisomal membrane
GO:0044424	IEA	PLAZA Homology	intracellular part	HOM03M004522

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR006845	Pex, N-terminal
IPR001841	Zinc finger, RING-type
IPR017907	Zinc finger, RING-type, conserved site
IPR018957	Zinc finger, C3HC4 RING-type

Mapman id	Description
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING

No SignalP domains detected for this gene.