PLAZA 3.0 Monocots gene overview : SI009G21270

Gene: SI009G21270 (Setaria italica)

Overview

Gene Identifier: SI009G21270
Transcript Identifier: SI009G21270.1
Gene Type: Coding gene
Location: scaffold_9 : 14944396-14950693 : negative

Family

Gene family: HOM03M000860
(81 genes in 15 species)
specific family
Duplication type: Tandem duplicate

Loading...please wait

Descriptions

Description (AnnoMine): Probable alpha-galactosidase D

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Si035849m
tid	Si035849m
id	PAC:19679934
GeneName	Si035849m.g

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0005975	IEA	Genome Project	carbohydrate metabolic process
GO:0009965	ISO	PLAZA Integrative Orthology	leaf morphogenesis	AT5G08370
GO:0009911	ISO	PLAZA Integrative Orthology	positive regulation of flower development	AT5G08370

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004553	IEA	Genome Project	hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0003824	IEA	InterPro	catalytic activity

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009505	ISO	PLAZA Integrative Orthology	plant-type cell wall	AT5G08370

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013785	Aldolase-type TIM barrel
IPR017853	Glycoside hydrolase, superfamily
IPR002241	Glycoside hydrolase, family 27
IPR013780	Glycosyl hydrolase, family 13, all-beta
IPR000111	Glycoside hydrolase, clan GH-D

Mapman id	Description
3.8.2	minor CHO metabolism.galactose.alpha-galactosidases

SignalP	Description
SignalP-noTM	Signal Peptide detected using noTM network