PLAZA 3.0 Monocots gene overview : SI006G23980

Gene: SI006G23980 (Setaria italica)

Overview

Gene Identifier: SI006G23980
Transcript Identifier: SI006G23980.1
Gene Type: Coding gene
Location: scaffold_6 : 34977542-34982080 : positive

Family

Gene family: HOM03M000752
(94 genes in 16 species)
specific family
Subfamily: ORTHO03M002277
(9 genes in 7 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): lumen protein retaining receptor

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Si013869m
tid	Si013869m
id	PAC:19692079
GeneName	Si013869m.g

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006621	IEA	Genome Project	protein retention in ER lumen
GO:0035437	IEA	PLAZA Homology	maintenance of protein localization in endoplasmic reticulum	HOM03M000752
GO:0045185	IEA	PLAZA Homology	maintenance of protein location	HOM03M000752
GO:0032507	IEA	PLAZA Homology	maintenance of protein location in cell	HOM03M000752
GO:0072595	IEA	PLAZA Homology	maintenance of protein localization in organelle	HOM03M000752
GO:0051651	IEA	PLAZA Homology	maintenance of location in cell	HOM03M000752

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0046923	IEA	Genome Project	ER retention sequence binding
GO:0005048	IEA	PLAZA Homology	signal sequence binding	HOM03M000752
GO:0042277	IEA	PLAZA Homology	peptide binding	HOM03M000752

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016021	IEA	Genome Project	integral to membrane

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000133	ER lumen protein retaining receptor

Mapman id	Description
29.3.4.1	protein.targeting.secretory pathway.ER

No SignalP domains detected for this gene.