PLAZA 3.0 Monocots gene overview : SI006G05780

Gene: SI006G05780 (Setaria italica)

Overview

Gene Identifier: SI006G05780
Transcript Identifier: SI006G05780.1
Gene Type: Coding gene
Location: scaffold_6 : 4808555-4813454 : negative

Family

Gene family: HOM03M003833
(24 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): DNA topoisomerase I, mitochondrial

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Si013227m
tid	Si013227m
id	PAC:19691866
GeneName	Si013227m.g

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006265	IEA	Genome Project	DNA topological change
GO:0010075	ISO	PLAZA Integrative Orthology	regulation of meristem growth	AT5G55300
GO:0009965	ISO	PLAZA Integrative Orthology	leaf morphogenesis	AT5G55300
GO:0009793	ISO	PLAZA Integrative Orthology	embryo development ending in seed dormancy	AT5G55300
GO:0009791	ISO	PLAZA Integrative Orthology	post-embryonic development	AT5G55300
GO:0019827	ISO	PLAZA Integrative Orthology	stem cell maintenance	AT5G55300
GO:0009933	ISO	PLAZA Integrative Orthology	meristem structural organization	AT5G55300
GO:0006338	ISO	PLAZA Integrative Orthology	chromatin remodeling	AT5G55300
GO:0048645	ISO	PLAZA Integrative Orthology	organ formation	AT5G55300
GO:0048439	ISO	PLAZA Integrative Orthology	flower morphogenesis	AT5G55300
GO:0010016	ISO	PLAZA Integrative Orthology	shoot system morphogenesis	AT5G55300

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003677	IEA	Genome Project	DNA binding
GO:0003917	IEA	Genome Project	DNA topoisomerase type I activity
GO:0003918	IEA	Genome Project	DNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT5G55300
GO:0061505	IEA	PLAZA Homology	DNA topoisomerase II activity	HOM03M003833

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005694	IEA	Genome Project	chromosome
GO:0016020	ISO	PLAZA Integrative Orthology	membrane	AT5G55310

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001631	DNA topoisomerase I
IPR014727	DNA topoisomerase I, catalytic core, alpha/beta subdomain
IPR025834	Topoisomerase I C-terminal domain
IPR013030	DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type
IPR011010	DNA breaking-rejoining enzyme, catalytic core
IPR014711	DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type
IPR013500	DNA topoisomerase I, catalytic core, eukaryotic-type
IPR008336	DNA topoisomerase I, DNA binding, eukaryotic-type
IPR013034	DNA topoisomerase I, domain 1
IPR013499	DNA topoisomerase I, eukaryotic-type
IPR018521	DNA topoisomerase I, active site

Mapman id	Description
28.1	DNA.synthesis/chromatin structure

No SignalP domains detected for this gene.