Gene: SI006G05780 (Setaria italica)

Overview top

Gene Identifier
SI006G05780
Transcript Identifier
SI006G05780.1
Gene Type
Coding gene
Location
scaffold_6 : 4808555-4813454 : negative

Family

Gene family
HOM03M003833
(24 genes in 16 species)
specific family

Loading...please wait

Descriptions

Description (AnnoMine)
DNA topoisomerase I, mitochondrial
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidSi013227m
tidSi013227m
idPAC:19691866
GeneNameSi013227m.g

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006265IEAGenome ProjectDNA topological change
GO:0010075ISOPLAZA Integrative Orthologyregulation of meristem growthAT5G55300
GO:0009965ISOPLAZA Integrative Orthologyleaf morphogenesisAT5G55300
GO:0009793ISOPLAZA Integrative Orthologyembryo development ending in seed dormancyAT5G55300
GO:0009791ISOPLAZA Integrative Orthologypost-embryonic developmentAT5G55300
GO:0019827ISOPLAZA Integrative Orthologystem cell maintenanceAT5G55300
GO:0009933ISOPLAZA Integrative Orthologymeristem structural organizationAT5G55300
GO:0006338ISOPLAZA Integrative Orthologychromatin remodelingAT5G55300
GO:0048645ISOPLAZA Integrative Orthologyorgan formationAT5G55300
GO:0048439ISOPLAZA Integrative Orthologyflower morphogenesisAT5G55300
GO:0010016ISOPLAZA Integrative Orthologyshoot system morphogenesisAT5G55300

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding
GO:0003917IEAGenome ProjectDNA topoisomerase type I activity
GO:0003918IEAGenome ProjectDNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT5G55300
GO:0061505IEAPLAZA HomologyDNA topoisomerase II activityHOM03M003833

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005694IEAGenome Projectchromosome
GO:0016020ISOPLAZA Integrative OrthologymembraneAT5G55310

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001631DNA topoisomerase I
IPR014727DNA topoisomerase I, catalytic core, alpha/beta subdomain
IPR025834Topoisomerase I C-terminal domain
IPR013030DNA topoisomerase I, DNA binding, mixed alpha/beta motif, eukaryotic-type
IPR011010DNA breaking-rejoining enzyme, catalytic core
IPR014711DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type
IPR013500DNA topoisomerase I, catalytic core, eukaryotic-type
IPR008336DNA topoisomerase I, DNA binding, eukaryotic-type
IPR013034DNA topoisomerase I, domain 1
IPR013499DNA topoisomerase I, eukaryotic-type
IPR018521DNA topoisomerase I, active site

Mapman id Description
28.1DNA.synthesis/chromatin structure
No SignalP domains detected for this gene.