Gene: SI004G08360 (Setaria italica)

Overview top

Gene Identifier
SI004G08360
Transcript Identifier
SI004G08360.1
Gene Type
Coding gene
Location
scaffold_4 : 6694669-6696657 : negative

Family

Gene family
HOM03M009405
(6 genes in 6 species)
specific family

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Descriptions

Description (AnnoMine)
HMG-Y-related protein A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidSi006032m
tidSi006032m
idPAC:19704171
GeneNameSi006032m.g

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006334IEAGenome Projectnucleosome assembly
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0031497IEAPLAZA Homologychromatin assemblyHOM03M009405
GO:0034728IEAPLAZA Homologynucleosome organizationHOM03M009405
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M009405

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEAGenome ProjectDNA binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000786IEAGenome Projectnucleosome
GO:0005634IEAGenome Projectnucleus
GO:0000785IEAInterProchromatin
GO:1990104IEAPLAZA HomologyDNA bending complexHOM03M009405

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000116High mobility group, HMG-I/HMG-Y
IPR017956AT hook, DNA-binding motif
IPR005818Linker histone H1/H5, domain H15
IPR020478AT hook-like
IPR011991Winged helix-turn-helix DNA-binding domain

Mapman id Description
28.1.3DNA.synthesis/chromatin structure.histone
No SignalP domains detected for this gene.