Gene: SI003G28650 (Setaria italica)

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Gene Identifier
SI003G28650
Transcript Identifier
SI003G28650.1
Gene Type
Coding gene
Location
scaffold_3 : 25989505-25993229 : positive

Family

Gene family
HOM03M000736
(95 genes in 16 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
nexin 2B
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidSi021663m
tidSi021663m
idPAC:19699299
GeneNameSi021663m.g

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007154IEAGenome Projectcell communication
GO:0016192ISOPLAZA Integrative Orthologyvesicle-mediated transportAT5G07120
GO:0045324ISOPLAZA Integrative Orthologylate endosome to vacuole transportAT5G07120
GO:0032502ISOPLAZA Integrative Orthologydevelopmental processAT5G07120 AT5G58440
GO:0051604ISOPLAZA Integrative Orthologyprotein maturationAT5G07120 AT5G58440
GO:0090351ISOPLAZA Integrative Orthologyseedling developmentAT5G07120 AT5G58440

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAGenome Projectprotein binding
GO:0035091IEAGenome Projectphosphatidylinositol binding
GO:0005543ISOPLAZA Integrative Orthologyphospholipid bindingAT5G07120
GO:0046982ISOPLAZA Integrative Orthologyprotein heterodimerization activityAT5G07120
GO:0043621ISOPLAZA Integrative Orthologyprotein self-associationAT5G58440

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0030904ISOPLAZA Integrative Orthologyretromer complexAT5G07120 AT5G58440
GO:0016020ISOPLAZA Integrative OrthologymembraneAT5G07120
GO:0005829ISOPLAZA Integrative OrthologycytosolAT5G07120 AT5G58440
GO:0032585ISOPLAZA Integrative Orthologymultivesicular body membraneAT5G07120 AT5G58440

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015404Vps5 C-terminal
IPR001683Phox homologous domain

Mapman id Description
35.1not assigned.no ontology
No SignalP domains detected for this gene.