Gene: SI003G24610 (Setaria italica)

Overview top

Gene Identifier
SI003G24610
Transcript Identifier
SI003G24610.1
Gene Type
Coding gene
Location
scaffold_3 : 20717818-20720845 : positive

Family

Gene family
HOM03M002248
(37 genes in 15 species)
specific family
Subfamily
ORTHO03M005369
(6 genes in 5 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
TGACG-sequence-specific DNA-binding protein TGA-1B
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidSi021442m
tidSi021442m
idPAC:19698887
GeneNameSi021442m.g

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEAGenome Projectregulation of transcription, DNA-dependent
GO:0042538ISOPLAZA Integrative Orthologyhyperosmotic salinity responseAT2G40950
GO:0045893ISOPLAZA Integrative Orthologypositive regulation of transcription, DNA-dependentAT2G40950
GO:0006986ISOPLAZA Integrative Orthologyresponse to unfolded proteinAT3G10800
GO:0006990ISOPLAZA Integrative Orthologypositive regulation of transcription from RNA polymerase II promoter involved in unfolded protein responseAT3G10800
GO:0009408ISOPLAZA Integrative Orthologyresponse to heatAT3G10800
GO:0034976ISOPLAZA Integrative Orthologyresponse to endoplasmic reticulum stressAT3G10800
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03M002248

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700IEAGenome Projectsequence-specific DNA binding transcription factor activity
GO:0043565IEAGenome Projectsequence-specific DNA binding
GO:0046983IEAGenome Projectprotein dimerization activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G40950 AT3G10800
GO:0005783ISOPLAZA Integrative Orthologyendoplasmic reticulumAT2G40950 AT3G10800
GO:0005737ISOPLAZA Integrative OrthologycytoplasmAT3G10800
GO:0048471ISOPLAZA Integrative Orthologyperinuclear region of cytoplasmAT3G10800
GO:0005635ISOPLAZA Integrative Orthologynuclear envelopeAT3G10800
GO:0005654ISOPLAZA Integrative OrthologynucleoplasmAT3G10800
GO:0016020ISOPLAZA Integrative OrthologymembraneAT3G10800

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR004827Basic-leucine zipper domain

Mapman id Description
27.3.35RNA.regulation of transcription.bZIP transcription factor family
No SignalP domains detected for this gene.