Gene: SI002G42900 (Setaria italica)

Overview top

Gene Identifier
SI002G42900
Transcript Identifier
SI002G42900.1
Gene Type
Coding gene
Location
scaffold_2 : 47441290-47445852 : positive

Family

Gene family
HOM03M000172
(279 genes in 14 species)
specific family
Duplication type
Block duplicate

Loading...please wait

Descriptions

Description (AnnoMine)
Putative E3 ubiquitin-protein ligase SINAT1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidSi030199m
tidSi030199m
idPAC:19709058
GeneNameSi030199m.g

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006511IEAGenome Projectubiquitin-dependent protein catabolic process
GO:0007275IEAGenome Projectmulticellular organismal development
GO:0016567IEAInterProprotein ubiquitination
GO:0044265IEAPLAZA Homologycellular macromolecule catabolic processHOM03M000172
GO:0032502IEAPLAZA Homologydevelopmental processHOM03M000172
GO:0030163IEAPLAZA Homologyprotein catabolic processHOM03M000172
GO:0032501IEAPLAZA Homologymulticellular organismal processHOM03M000172
GO:0051603IEAPLAZA Homologyproteolysis involved in cellular protein catabolic processHOM03M000172
GO:0006508IEAPLAZA HomologyproteolysisHOM03M000172
GO:0044257IEAPLAZA Homologycellular protein catabolic processHOM03M000172
GO:0043632IEAPLAZA Homologymodification-dependent macromolecule catabolic processHOM03M000172
GO:0070647IEAPLAZA Homologyprotein modification by small protein conjugation or removalHOM03M000172
GO:0044767IEAPLAZA Homologysingle-organism developmental processHOM03M000172
GO:1901575IEAPLAZA Homologyorganic substance catabolic processHOM03M000172
GO:0019941IEAPLAZA Homologymodification-dependent protein catabolic processHOM03M000172
GO:0032446IEAPLAZA Homologyprotein modification by small protein conjugationHOM03M000172
GO:0009056IEAPLAZA Homologycatabolic processHOM03M000172
GO:0009057IEAPLAZA Homologymacromolecule catabolic processHOM03M000172
GO:0044707IEAPLAZA Homologysingle-multicellular organism processHOM03M000172
GO:0044248IEAPLAZA Homologycellular catabolic processHOM03M000172

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0004842IEAInterProubiquitin-protein ligase activity
GO:0008270IEAInterProzinc ion binding
GO:0016874IEAPLAZA Homologyligase activityHOM03M000172
GO:0019787IEAPLAZA Homologysmall conjugating protein ligase activityHOM03M000172
GO:0016881IEAPLAZA Homologyacid-amino acid ligase activityHOM03M000172
GO:0016879IEAPLAZA Homologyligase activity, forming carbon-nitrogen bondsHOM03M000172

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEAGenome Projectnucleus

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR004162E3 ubiquitin-protein ligase SINA like
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR013323SIAH-type domain
IPR013010Zinc finger, SIAH-type
IPR018121Seven-in-absentia protein, TRAF-like domain
IPR001841Zinc finger, RING-type
IPR008974TRAF-like

Mapman id Description
33.99development.unspecified
No SignalP domains detected for this gene.