Gene: SI002G23130 (Setaria italica)

Overview top

Gene Identifier
SI002G23130
Transcript Identifier
SI002G23130.1
Gene Type
Coding gene
Location
scaffold_2 : 32761704-32763902 : positive

Family

Gene family
HOM03M000147
(323 genes in 14 species)
specific family

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Descriptions

Description (AnnoMine)
Endothelial zinc finger protein induced by tumor necrosis factor alpha
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidSi029726m
tidSi029726m
idPAC:19712855
GeneNameSi029726m.g

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009959ISOPLAZA Integrative Orthologynegative gravitropismAT2G01940
GO:0009958ISOPLAZA Integrative Orthologypositive gravitropismAT2G01940
GO:2000904ISOPLAZA Integrative Orthologyregulation of starch metabolic processAT2G01940 AT1G68130
GO:0010031ISOPLAZA Integrative OrthologycircumnutationAT2G01940
GO:0009590ISOPLAZA Integrative Orthologydetection of gravityAT2G01940
GO:0006355ISOPLAZA Integrative Orthologyregulation of transcription, DNA-dependentAT2G01940 AT1G68130 AT1G25250

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008270IEAGenome Projectzinc ion binding
GO:0003676IEAInterPronucleic acid binding
GO:0046872IEAInterPrometal ion binding
GO:0046982ISOPLAZA Integrative Orthologyprotein heterodimerization activityAT1G68130
GO:0044212ISOPLAZA Integrative Orthologytranscription regulatory region DNA bindingAT1G68130
GO:0043621ISOPLAZA Integrative Orthologyprotein self-associationAT1G68130

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005622IEAGenome Projectintracellular
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G01940 AT1G68130

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015880Zinc finger, C2H2-like
IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
IPR007087Zinc finger, C2H2

Mapman id Description
27.3.11RNA.regulation of transcription.C2H2 zinc finger family
No SignalP domains detected for this gene.