PLAZA 3.0 Monocots gene overview : SI001G29600

Gene: SI001G29600 (Setaria italica)

Overview

Gene Identifier: SI001G29600
Transcript Identifier: SI001G29600.1
Gene Type: Coding gene
Location: scaffold_1 : 35483752-35485250 : negative

Family

Gene family: HOM03M001998
(41 genes in 16 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description (AnnoMine): DNA topoisomerase 2

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Si019661m
tid	Si019661m
id	PAC:19687031
GeneName	Si019661m.g

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006265	IEA	Genome Project	DNA topological change
GO:0006259	IEA	InterPro	DNA metabolic process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005524	IEA	Genome Project	ATP binding
GO:0003918	IEA	Genome Project	DNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0003677	IEA	Genome Project	DNA binding
GO:0061505	IEA	PLAZA Homology	DNA topoisomerase II activity	HOM03M001998

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005694	IEA	Genome Project	chromosome

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013760	DNA topoisomerase, type IIA-like domain
IPR001154	DNA topoisomerase II, eukaryotic-type
IPR024946	Arginine repressor C-terminal-like domain
IPR013758	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta
IPR002205	DNA topoisomerase, type IIA, subunit A/C-terminal

Mapman id	Description
28.1	DNA.synthesis/chromatin structure

No SignalP domains detected for this gene.