PLAZA 3.0 Monocots gene overview : SI001G16040

Gene: SI001G16040 (Setaria italica)

Overview

Gene Identifier: SI001G16040
Transcript Identifier: SI001G16040.1
Gene Type: Coding gene
Location: scaffold_1 : 19843380-19857254 : positive

Family

Gene family: HOM03M005555
(18 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): associated protein CTR9 homolog

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Si016168m
tid	Si016168m
id	PAC:19690061
GeneName	Si016168m.g

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0016571	ISO	PLAZA Integrative Orthology	histone methylation	AT2G06210
GO:0045893	ISO	PLAZA Integrative Orthology	positive regulation of transcription, DNA-dependent	AT2G06210
GO:0009910	ISO	PLAZA Integrative Orthology	negative regulation of flower development	AT2G06210

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	Genome Project	protein binding
GO:0042802	IEA	Genome Project	identical protein binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016020	ISO	PLAZA Integrative Orthology	membrane	AT2G06210

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR011990	Tetratricopeptide-like helical
IPR019734	Tetratricopeptide repeat
IPR001440	Tetratricopeptide TPR1
IPR013026	Tetratricopeptide repeat-containing domain

Mapman id	Description
33.99	development.unspecified

No SignalP domains detected for this gene.