Gene: SI001G11170 (Setaria italica)

Overview top

Gene Identifier
SI001G11170
Transcript Identifier
SI001G11170.1
Gene Type
Coding gene
Location
scaffold_1 : 9334501-9340711 : negative

Family

Gene family
HOM03M004522
(21 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine)
Peroxisome biogenesis protein 2
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidSi017732m
tidSi017732m
idPAC:19688905
GeneNameSi017732m.g

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007031IEAGenome Projectperoxisome organization
GO:0009640ISOPLAZA Integrative OrthologyphotomorphogenesisAT1G79810
GO:0006513ISOPLAZA Integrative Orthologyprotein monoubiquitinationAT1G79810
GO:0016558ISOPLAZA Integrative Orthologyprotein import into peroxisome matrixAT1G79810
GO:0006635ISOPLAZA Integrative Orthologyfatty acid beta-oxidationAT1G79810

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0008270IEAInterProzinc ion binding
GO:0046872IEAInterPrometal ion binding
GO:0004842ISOPLAZA Integrative Orthologyubiquitin-protein ligase activityAT1G79810

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005778IEAGenome Projectperoxisomal membrane
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT1G79810
GO:0005829ISOPLAZA Integrative OrthologycytosolAT1G79810
GO:0005783ISOPLAZA Integrative Orthologyendoplasmic reticulumAT1G79810
GO:0005777ISOPLAZA Integrative OrthologyperoxisomeAT1G79810
GO:0044424IEAPLAZA Homologyintracellular partHOM03M004522

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR018957Zinc finger, C3HC4 RING-type
IPR017907Zinc finger, RING-type, conserved site
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR001841Zinc finger, RING-type
IPR006845Pex, N-terminal

Mapman id Description
29.5.11.4.2protein.degradation.ubiquitin.E3.RING
No SignalP domains detected for this gene.