PLAZA 3.0 Monocots gene overview : SI001G07400

Gene: SI001G07400 (Setaria italica)

Overview

Gene Identifier: SI001G07400
Transcript Identifier: SI001G07400.1
Gene Type: Coding gene
Location: scaffold_1 : 6559651-6563907 : negative

Family

Gene family: HOM03M000435
(145 genes in 16 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): Glyceraldehyde 3-phosphate dehydrogenase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Si017360m
tid	Si017360m
id	PAC:19688737
GeneName	Si017360m.g

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0055114	IEA	Genome Project	oxidation-reduction process
GO:0006006	IEA	InterPro	glucose metabolic process
GO:0048658	ISO	PLAZA Integrative Orthology	anther wall tapetum development	AT1G79530
GO:0009555	ISO	PLAZA Integrative Orthology	pollen development	AT1G79530
GO:0080144	ISO	PLAZA Integrative Orthology	amino acid homeostasis	AT1G79530 AT1G16300
GO:0080022	ISO	PLAZA Integrative Orthology	primary root development	AT1G79530 AT1G16300
GO:0005975	ISO	PLAZA Integrative Orthology	carbohydrate metabolic process	AT1G79530 AT1G16300

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016620	IEA	Genome Project	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0050661	IEA	InterPro	NADP binding
GO:0051287	IEA	InterPro	NAD binding
GO:0008270	ISO	PLAZA Integrative Orthology	zinc ion binding	AT1G79530
GO:0005507	ISO	PLAZA Integrative Orthology	copper ion binding	AT1G79530
GO:0004365	ISO	PLAZA Integrative Orthology	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity	AT1G79530 AT1G16300
GO:0016903	IEA	PLAZA Homology	oxidoreductase activity, acting on the aldehyde or oxo group of donors	HOM03M000435

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009536	ISO	PLAZA Integrative Orthology	plastid	AT1G79530 AT1G16300
GO:0016020	ISO	PLAZA Integrative Orthology	membrane	AT1G79530

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR020829	Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
IPR020831	Glyceraldehyde/Erythrose phosphate dehydrogenase family
IPR020830	Glyceraldehyde 3-phosphate dehydrogenase, active site
IPR016040	NAD(P)-binding domain
IPR020828	Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain
IPR006424	Glyceraldehyde-3-phosphate dehydrogenase, type I

Mapman id	Description
4.1.8	glycolysis.cytosolic branch.glyceraldehyde 3-phosphate dehydrogenase (GAP-DH)

No SignalP domains detected for this gene.