Gene: SI001G03940 (Setaria italica)

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Gene Identifier
SI001G03940
Transcript Identifier
SI001G03940.1
Gene Type
Coding gene
Location
scaffold_1 : 3710810-3714620 : negative

Family

Gene family
HOM03M000300
(184 genes in 16 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
Probable histone deacetylase 1-B
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
pidSi016908m
tidSi016908m
idPAC:19687270
GeneNameSi016908m.g

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016575IEAInterProhistone deacetylation
GO:2000026ISOPLAZA Integrative Orthologyregulation of multicellular organismal developmentAT4G38130
GO:0009861ISOPLAZA Integrative Orthologyjasmonic acid and ethylene-dependent systemic resistanceAT4G38130
GO:0045892ISOPLAZA Integrative Orthologynegative regulation of transcription, DNA-dependentAT4G38130
GO:0016573ISOPLAZA Integrative Orthologyhistone acetylationAT4G38130
GO:0009294ISOPLAZA Integrative OrthologyDNA mediated transformationAT4G38130
GO:0009405ISOPLAZA Integrative OrthologypathogenesisAT4G38130

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004407IEAInterProhistone deacetylase activity
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT4G38130
GO:0033558IEAPLAZA Homologyprotein deacetylase activityHOM03M000300

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Integrative OrthologynucleusAT4G38130

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003084Histone deacetylase
IPR000286Histone deacetylase superfamily
IPR023801Histone deacetylase domain

Mapman id Description
27.3.55RNA.regulation of transcription.HDA
No SignalP domains detected for this gene.