PLAZA 3.0 Monocots gene overview : SI001G03390

Gene: SI001G03390 (Setaria italica)

Overview

Gene Identifier: SI001G03390
Transcript Identifier: SI001G03390.1
Gene Type: Coding gene
Location: scaffold_1 : 3107193-3111682 : positive

Family

Gene family: HOM03M004452
(21 genes in 16 species)
specific family

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Descriptions

Description (AnnoMine): Polyribonucleotide 5'-hydroxyl-kinase Clp1

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Si017237m
tid	Si017237m
id	PAC:19688011
GeneName	Si017237m.g

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006397	ISO	PLAZA Integrative Orthology	mRNA processing	AT3G04680
GO:0009908	ISO	PLAZA Integrative Orthology	flower development	AT3G04680
GO:0010228	ISO	PLAZA Integrative Orthology	vegetative to reproductive phase transition of meristem	AT3G04680
GO:0048827	ISO	PLAZA Integrative Orthology	phyllome development	AT3G04680

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	ISO	PLAZA Integrative Orthology	protein binding	AT3G04680

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT3G04680
GO:0005849	ISO	PLAZA Integrative Orthology	mRNA cleavage factor complex	AT3G04680

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR010655	Pre-mRNA cleavage complex II Clp1
IPR027417	P-loop containing nucleoside triphosphate hydrolase

Mapman id	Description
35.2	not assigned.unknown

No SignalP domains detected for this gene.