PLAZA 3.0 Monocots gene overview : SI001G02770

Gene: SI001G02770 (Setaria italica)

Overview

Gene Identifier: SI001G02770
Transcript Identifier: SI001G02770.1
Gene Type: Coding gene
Location: scaffold_1 : 2361821-2363390 : negative

Family

Gene family: HOM03M000933
(76 genes in 16 species)
specific family
Subfamily: ORTHO03M000315
(17 genes in 12 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description (AnnoMine): Probable rhamnose biosynthetic enzyme 3

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	Si019226m
tid	Si019226m
id	PAC:19687414
GeneName	Si019226m.g

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0044237	IEA	Genome Project	cellular metabolic process
GO:0010192	ISO	PLAZA Integrative Orthology	mucilage biosynthetic process	AT1G53500
GO:0010214	ISO	PLAZA Integrative Orthology	seed coat development	AT1G53500
GO:0010253	ISO	PLAZA Integrative Orthology	UDP-rhamnose biosynthetic process	AT1G53500
GO:0046379	IEA	PLAZA Homology	extracellular polysaccharide metabolic process	HOM03M000933
GO:0045226	IEA	PLAZA Homology	extracellular polysaccharide biosynthetic process	HOM03M000933

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003824	IEA	Genome Project	catalytic activity
GO:0050662	IEA	Genome Project	coenzyme binding
GO:0010280	ISO	PLAZA Integrative Orthology	UDP-L-rhamnose synthase activity	AT1G53500
GO:0010489	ISO	PLAZA Integrative Orthology	UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity	AT1G53500
GO:0010490	ISO	PLAZA Integrative Orthology	UDP-4-keto-rhamnose-4-keto-reductase activity	AT1G53500
GO:0050377	ISO	PLAZA Integrative Orthology	UDP-glucose 4,6-dehydratase activity	AT1G53500
GO:0008831	IEA	PLAZA Homology	dTDP-4-dehydrorhamnose reductase activity	HOM03M000933

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005829	ISO	PLAZA Integrative Orthology	cytosol	AT1G53500

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001509	NAD-dependent epimerase/dehydratase
IPR016040	NAD(P)-binding domain

Mapman id	Description
10.1.10	cell wall.precursor synthesis.UDP-glucose 4,6-dehydratase

No SignalP domains detected for this gene.